Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10l01
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   1.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.5  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 175 RFLPDMTLKNPGSDDMVWRLRMNILIYIHLSF 80
           +F PD+ + +PG  D  +R R   +  I  ++
Sbjct: 190 KFEPDLDMNHPGFADKEYRARRKFIAEIAFAY 221


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = -3

Query: 391 GADTSGQVCRTCSRTNRITRGTSDGRARRTLTGSSFSPCTIT 266
           GA  SG      S +N  T   S      T +  SF P T+T
Sbjct: 599 GASGSGSAENLSSGSNNQTSSASRENTSNTTSMESFKPPTLT 640


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 383 YLWPGLSDMFTDKSNYPRHVR 321
           YLW  L  +  D+   PR+++
Sbjct: 459 YLWEFLLKLLQDREYCPRYIK 479


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,063
Number of Sequences: 438
Number of extensions: 3933
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)