Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k24
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...   125   5e-30
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    29   0.59 

>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score =  125 bits (302), Expect = 5e-30
 Identities = 71/117 (60%), Positives = 85/117 (72%), Gaps = 14/117 (11%)
 Frame = +2

Query: 350 LDRVTLAEHFRDEEGQDLLLFIDNIFRFTQAGSEV-----RTRSSYQFE-----GRGGR- 496
           L  +T+AE+FRD EGQD+LLFIDNIFRFTQAGSEV     R  S+  ++       G   
Sbjct: 280 LTGLTVAEYFRDIEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGAMQ 339

Query: 497 ---FTVKLSLRSNLKAVYVPADDLTDPAPATTFAHLDATTVLSPAIAELGVYPAVDP 658
               T K    ++++AVYVPADDLTDPAPATTFAHLDATTVLS +I+ELG+YPAVDP
Sbjct: 340 ERITTTKKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRSISELGIYPAVDP 396



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 19/27 (70%), Positives = 24/27 (88%)
 Frame = +3

Query: 279 ELETRASLVYGQKDEPHGARARVALTG 359
           E E++A+LV+GQ +EP GARARVALTG
Sbjct: 256 EGESKAALVFGQMNEPPGARARVALTG 282


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = +2

Query: 482 GRGGRFTVKLSLRSNLKAVYVPADDLTDPAPATTFAHLDATTVLSPAIAELG 637
           GRGG+F       S L  + V  D  T       FA  +   VL PA+   G
Sbjct: 405 GRGGQFGSNDERESTLNQLLVEMDGFTSSEHIVVFAGTNRPDVLDPALLRPG 456


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,065,266
Number of Sequences: 5004
Number of extensions: 35215
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)