Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10k24
(660 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 98 6e-21
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0) 88 7e-18
SB_26832| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_35834| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26) 29 4.4
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41) 29 4.4
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 29 4.4
SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73) 29 4.4
SB_39538| Best HMM Match : VWA (HMM E-Value=0) 28 5.9
SB_15652| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 238
Score = 97.9 bits (233), Expect = 6e-21
Identities = 61/113 (53%), Positives = 75/113 (66%), Gaps = 18/113 (15%)
Frame = +2
Query: 350 LDRVTLAEHFRD----EEGQDLLLFIDNIFRFTQAGSEV-----RTRSSYQFE------- 481
L +T+AE+FRD +G+D+L F+DNIFRFTQAGSEV R S+ ++
Sbjct: 125 LSGLTIAEYFRDGAGEAQGKDVLFFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEM 184
Query: 482 -GRGGRFT-VKLSLRSNLKAVYVPADDLTDPAPATTFAHLDATTVLSPAIAEL 634
R T K ++++AVYVPADDLTDPAPATTFAHLDATTVLS IAEL
Sbjct: 185 GAMQERITSTKKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAEL 237
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/25 (64%), Positives = 22/25 (88%)
Frame = +3
Query: 285 ETRASLVYGQKDEPHGARARVALTG 359
E++A+ V+GQ +EP GARARVAL+G
Sbjct: 103 ESKATFVFGQMNEPPGARARVALSG 127
>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
Length = 448
Score = 87.8 bits (208), Expect = 7e-18
Identities = 40/53 (75%), Positives = 46/53 (86%)
Frame = +2
Query: 500 TVKLSLRSNLKAVYVPADDLTDPAPATTFAHLDATTVLSPAIAELGVYPAVDP 658
T K ++++A+YVPADDLTDPAPATTFAHLDATTVLS IAELG+YPAVDP
Sbjct: 268 TTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRGIAELGIYPAVDP 320
>SB_26832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/27 (62%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = -1
Query: 348 PPGHA-PRGAHPSGR-IPGTPGSPART 274
PPG A P G PSGR +PG PG P RT
Sbjct: 478 PPGPAGPPG--PSGRYVPGPPGPPGRT 502
>SB_35834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Frame = +1
Query: 577 YDLRSLRRDHGPLARHR-----GAGCISGGG 654
Y+LR +R H P R R G GC GGG
Sbjct: 16 YNLRKRKRSHSPAQRRRSGGGGGGGCEGGGG 46
>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
Length = 687
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -1
Query: 351 RPPGHAPRGAHPSGRIPGTPGSPARTPAKI 262
RPP R H GR P PG P P ++
Sbjct: 387 RPPHEPGRPPHELGRPPHEPGRPPHEPGRL 416
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 357 RSRPPGHAPRGAHPSGRIPGTPGSPARTPAK 265
+ RPP R H GR P PG P P +
Sbjct: 322 QGRPPYEPGRPPHEPGRPPHEPGRPPHEPGR 352
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -1
Query: 351 RPPGHAPRGAHPSGRIPGTPGSPARTPAK 265
RPP R H GR P PG P P +
Sbjct: 331 RPPHEPGRPPHEPGRPPHEPGRPPHEPGR 359
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -1
Query: 351 RPPGHAPRGAHPSGRIPGTPGSPARTPAK 265
RPP R H GR P PG P P +
Sbjct: 338 RPPHEPGRPPHEPGRPPHEPGRPPHEPGR 366
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -1
Query: 351 RPPGHAPRGAHPSGRIPGTPGSPARTPAK 265
RPP R H GR P PG P P +
Sbjct: 345 RPPHEPGRPPHEPGRPPHEPGRPPHEPGR 373
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -1
Query: 351 RPPGHAPRGAHPSGRIPGTPGSPARTPAK 265
RPP R H GR P PG P P +
Sbjct: 352 RPPHEPGRPPHEPGRPPHEPGRPPHEPGR 380
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -1
Query: 351 RPPGHAPRGAHPSGRIPGTPGSPARTPAK 265
RPP R H GR P PG P P +
Sbjct: 366 RPPHEPGRPPHEPGRPPYEPGRPPHEPGR 394
>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
Length = 638
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +1
Query: 235 PQ*SRVPRSNLRRSTSWRPGR--PW-YTARRMSPTGRVP 342
PQ R+P + R SW P R P+ T RR+SP R P
Sbjct: 208 PQKERIPHQSPERLPSWSPVRQSPFNKTHRRLSPPRRSP 246
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -1
Query: 351 RPPGHAPRGAHPSGRIPGTPGSPARTPAKI 262
RPP R H GR P PG P P ++
Sbjct: 153 RPPHEPGRPPHELGRPPHEPGRPPHEPGRL 182
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 357 RSRPPGHAPRGAHPSGRIPGTPGSPARTPAK 265
+ RPP R H GR P PG P P +
Sbjct: 88 QGRPPYEPGRPPHEPGRPPHEPGRPPHEPGR 118
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -1
Query: 351 RPPGHAPRGAHPSGRIPGTPGSPARTPAK 265
RPP R H GR P PG P P +
Sbjct: 97 RPPHEPGRPPHEPGRPPHEPGRPPHEPGR 125
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -1
Query: 351 RPPGHAPRGAHPSGRIPGTPGSPARTPAK 265
RPP R H GR P PG P P +
Sbjct: 104 RPPHEPGRPPHEPGRPPHEPGRPPHEPGR 132
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -1
Query: 351 RPPGHAPRGAHPSGRIPGTPGSPARTPAK 265
RPP R H GR P PG P P +
Sbjct: 111 RPPHEPGRPPHEPGRPPHEPGRPPHEPGR 139
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -1
Query: 351 RPPGHAPRGAHPSGRIPGTPGSPARTPAK 265
RPP R H GR P PG P P +
Sbjct: 118 RPPHEPGRPPHEPGRPPHEPGRPPHEPGR 146
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -1
Query: 351 RPPGHAPRGAHPSGRIPGTPGSPARTPAK 265
RPP R H GR P PG P P +
Sbjct: 132 RPPHEPGRPPHEPGRPPYEPGRPPHEPGR 160
>SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73)
Length = 617
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = -1
Query: 354 SRPPGHAPRGAHPSGRIPGTPGSPAR 277
S+P G A RGA P+GR T G+PAR
Sbjct: 330 SKPGGVAARGA-PAGRGAATRGAPAR 354
>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
Length = 3208
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 398 PGPPRLGSAQPRSPGQGHPGTRPVGL 321
PG P GS P SPG G PG+ G+
Sbjct: 1356 PGFPSPGSGIPGSPGSGIPGSPGSGI 1381
>SB_15652| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 689
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 351 RPPGHAPRGAHPSGRIPGTPGSPARTPAKITSRNS 247
+PPG P+ H + PG G RTP + N+
Sbjct: 583 QPPGKVPQPPHTTPLAPGMGGERGRTPNADLTHNA 617
>SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2578
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 313 WPYTRDARVSSSYSGEDYFEELLIIAAHI 227
WP+ R R SS +GED +L + H+
Sbjct: 2435 WPHWRRTRRSSGVAGEDNLYDLYAVCNHL 2463
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,461,855
Number of Sequences: 59808
Number of extensions: 302384
Number of successful extensions: 2508
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2500
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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