Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10k23
(666 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 301 3e-82
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 297 3e-81
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 297 3e-81
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 296 7e-81
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 295 1e-80
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 295 1e-80
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 295 2e-80
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 294 4e-80
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 293 7e-80
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 136 1e-32
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 136 1e-32
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 134 5e-32
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 133 9e-32
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 133 9e-32
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 131 5e-31
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 131 5e-31
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 122 3e-28
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 121 4e-28
At4g37190.1 68417.m05265 expressed protein 33 0.17
At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase fami... 32 0.39
At2g31580.1 68415.m03858 expressed protein contains Pfam profi... 30 1.2
At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein... 29 3.7
At1g55690.3 68414.m06377 SEC14 cytosolic factor family protein /... 29 3.7
At1g55690.2 68414.m06376 SEC14 cytosolic factor family protein /... 29 3.7
At1g55690.1 68414.m06375 SEC14 cytosolic factor family protein /... 29 3.7
At5g45380.1 68418.m05577 sodium:solute symporter family protein ... 28 6.4
At4g20990.1 68417.m03038 carbonic anhydrase family protein simil... 28 6.4
At1g67530.1 68414.m07694 armadillo/beta-catenin repeat family pr... 28 6.4
At1g46984.1 68414.m05220 F-box protein-related contains weak hit... 28 6.4
At1g27070.1 68414.m03300 5'-AMP-activated protein kinase-related... 28 6.4
At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein ... 27 8.5
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 301 bits (738), Expect = 3e-82
Identities = 136/173 (78%), Positives = 150/173 (86%), Gaps = 1/173 (0%)
Frame = +2
Query: 149 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDS-DLQLERINVYYNEATGGKY 325
MREI+H+QGGQCGNQIG+KFWEVI DEHG+DPTG Y+GDS DLQLERINVYYNEA+GG+Y
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60
Query: 326 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 505
VPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDV
Sbjct: 61 VPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120
Query: 506 VRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSVVPS 664
VRKEAE CDCLQGFQ ISKIREEYPDR+M TFSV PS
Sbjct: 121 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPS 173
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 297 bits (730), Expect = 3e-81
Identities = 135/172 (78%), Positives = 148/172 (86%)
Frame = +2
Query: 149 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 328
MREI+HIQGGQCGNQIG+KFWEV+ DEHGIDPTG Y G+SDLQLER+NVYYNEA+ G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60
Query: 329 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 508
PRAIL+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61 PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
Query: 509 RKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSVVPS 664
RKEAE CDCLQGFQ ISKIREEYPDR+M TFSV PS
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPS 172
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 297 bits (730), Expect = 3e-81
Identities = 137/173 (79%), Positives = 148/173 (85%), Gaps = 1/173 (0%)
Frame = +2
Query: 149 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDS-DLQLERINVYYNEATGGKY 325
MREI+HIQGGQCGNQIG+KFWEVI DEHGID TG Y GD+ DLQLERINVYYNEA+GG+Y
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRY 60
Query: 326 VPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 505
VPRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDV
Sbjct: 61 VPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120
Query: 506 VRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSVVPS 664
VRKEAE CDCLQGFQ ISKIREEYPDR+M TFSV PS
Sbjct: 121 VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPS 173
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 296 bits (727), Expect = 7e-81
Identities = 137/172 (79%), Positives = 146/172 (84%)
Frame = +2
Query: 149 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 328
MREI+HIQGGQCGNQIGAKFWEVI EHGID TG GD+DLQLERINVY+NEA+GGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGGKYV 60
Query: 329 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 508
PRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 509 RKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSVVPS 664
RKEAE CDCLQGFQ ISKIREEYPDR+M TFSV PS
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPS 172
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 295 bits (725), Expect = 1e-80
Identities = 135/172 (78%), Positives = 146/172 (84%)
Frame = +2
Query: 149 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 328
MREI+HIQGGQCGNQIGAKFWEV+ EHGIDPTG Y GDSDLQLERINVYYNEA+ G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 329 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 508
PRA+L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 509 RKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSVVPS 664
RKEAE CDCLQGFQ ISKIREEYPDR+M TFSV PS
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPS 172
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 295 bits (725), Expect = 1e-80
Identities = 135/172 (78%), Positives = 146/172 (84%)
Frame = +2
Query: 149 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 328
MREI+HIQGGQCGNQIGAKFWEV+ EHGIDPTG Y GDSDLQLERINVYYNEA+ G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 329 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 508
PRA+L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 509 RKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSVVPS 664
RKEAE CDCLQGFQ ISKIREEYPDR+M TFSV PS
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPS 172
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 295 bits (723), Expect = 2e-80
Identities = 137/172 (79%), Positives = 146/172 (84%)
Frame = +2
Query: 149 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 328
MREI+HIQGGQCGNQIGAKFWEVI DEHGID TG Y GDS LQLERI+VY+NEA+GGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGGKYV 60
Query: 329 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 508
PRA+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 509 RKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSVVPS 664
RKEAE DCLQGFQ ISKIREEYPDR+M TFSV PS
Sbjct: 121 RKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPS 172
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 294 bits (721), Expect = 4e-80
Identities = 134/172 (77%), Positives = 147/172 (85%)
Frame = +2
Query: 149 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 328
MREI+HIQGGQCGNQIG+KFWEV++ EHGID TG Y GDS+LQLER+NVYYNEA+ G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYV 60
Query: 329 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 508
PRA+L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 509 RKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSVVPS 664
RKEAE CDCLQGFQ ISKIREEYPDR+M TFSV PS
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPS 172
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 293 bits (719), Expect = 7e-80
Identities = 133/172 (77%), Positives = 146/172 (84%)
Frame = +2
Query: 149 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 328
MREI+HIQGGQCGNQIGAKFWEV+ EHGID TG Y G++DLQLER+NVYYNEA+ G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60
Query: 329 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 508
PRA+L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 509 RKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSVVPS 664
RKEAE CDCLQGFQ ISKIREEYPDR+M TFSV PS
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPS 172
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 136 bits (329), Expect = 1e-32
Identities = 67/174 (38%), Positives = 97/174 (55%), Gaps = 2/174 (1%)
Frame = +2
Query: 149 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQL--ERINVYYNEATGGK 322
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 323 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 502
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
Query: 503 VVRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSVVPS 664
VRK A+ C LQGF + ++ +Y + F++ PS
Sbjct: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPS 174
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 136 bits (329), Expect = 1e-32
Identities = 67/174 (38%), Positives = 97/174 (55%), Gaps = 2/174 (1%)
Frame = +2
Query: 149 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQL--ERINVYYNEATGGK 322
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 323 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 502
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
Query: 503 VVRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSVVPS 664
VRK A+ C LQGF + ++ +Y + F++ PS
Sbjct: 121 RVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPS 174
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 134 bits (324), Expect = 5e-32
Identities = 61/135 (45%), Positives = 88/135 (65%), Gaps = 2/135 (1%)
Frame = +2
Query: 149 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQL--ERINVYYNEATGGK 322
MREI+ I GQ G Q+G WE+ EHGI P GT DS + + N +++E + G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 323 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 502
+VPRA+ +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD+ L+
Sbjct: 61 HVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLE 120
Query: 503 VVRKEAEGCDCLQGF 547
+RK A+ C LQGF
Sbjct: 121 RLRKLADNCTGLQGF 135
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 133 bits (322), Expect = 9e-32
Identities = 67/174 (38%), Positives = 95/174 (54%), Gaps = 2/174 (1%)
Frame = +2
Query: 149 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQL--ERINVYYNEATGGK 322
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 323 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 502
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 503 VVRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSVVPS 664
+RK A+ C LQGF + ++ +Y + F+V PS
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPS 174
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 133 bits (322), Expect = 9e-32
Identities = 67/174 (38%), Positives = 95/174 (54%), Gaps = 2/174 (1%)
Frame = +2
Query: 149 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQL--ERINVYYNEATGGK 322
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 323 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 502
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 503 VVRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSVVPS 664
+RK A+ C LQGF + ++ +Y + F+V PS
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPS 174
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 131 bits (316), Expect = 5e-31
Identities = 66/174 (37%), Positives = 94/174 (54%), Gaps = 2/174 (1%)
Frame = +2
Query: 149 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQL--ERINVYYNEATGGK 322
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 323 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 502
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 503 VVRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSVVPS 664
+RK A+ C LQGF + ++ +Y + F+V PS
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPS 174
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 131 bits (316), Expect = 5e-31
Identities = 66/174 (37%), Positives = 94/174 (54%), Gaps = 2/174 (1%)
Frame = +2
Query: 149 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQL--ERINVYYNEATGGK 322
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 323 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 502
+VPRA+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 503 VVRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSVVPS 664
+RK A+ C LQGF + ++ +Y + F+V PS
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPS 174
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 122 bits (293), Expect = 3e-28
Identities = 56/173 (32%), Positives = 97/173 (56%), Gaps = 2/173 (1%)
Frame = +2
Query: 152 REIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 331
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 332 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 505
RA+L+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + + ++D+
Sbjct: 63 RALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEIMDM 121
Query: 506 VRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSVVPS 664
+ +EA+G D L+GF + + + Y +++ T+SV P+
Sbjct: 122 IDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPN 174
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 121 bits (292), Expect = 4e-28
Identities = 56/173 (32%), Positives = 97/173 (56%), Gaps = 2/173 (1%)
Frame = +2
Query: 152 REIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 331
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 332 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 505
RA+L+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + + ++D+
Sbjct: 63 RALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEIMDM 121
Query: 506 VRKEAEGCDCLQGFQXXXXXXXXXXXXXXXXXISKIREEYPDRIMNTFSVVPS 664
+ +EA+G D L+GF + + + Y +++ T+SV P+
Sbjct: 122 IDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPN 174
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 33.1 bits (72), Expect = 0.17
Identities = 29/84 (34%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Frame = +2
Query: 149 MREIVHIQGGQCGNQIGAKFWEVISDEHGI------DPTGTYHG-DSDLQLERINVYYNE 307
MREIV IQ G+ N +G+ FW + G+ DP H D D+
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGLASDPESDPIFRNHNLDMDVLYRSGETQQGV 60
Query: 308 ATGGKYVPRAILVDLEP--GTMDS 373
AT Y PR + V+L+ GTM S
Sbjct: 61 AT---YTPRLVSVNLKGALGTMSS 81
>At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase family
protein contains Pfam profile PF00383: Cytidine and
deoxycytidylate deaminase zinc-binding region
Length = 1307
Score = 31.9 bits (69), Expect = 0.39
Identities = 23/88 (26%), Positives = 38/88 (43%)
Frame = -3
Query: 469 GVVTLSPVVASTRLPKDKVVRTEDLTEWSGAYRVHCPGL*VHKDSPRHVLSSSRLVIVHV 290
G V+ + +L ++K V + EW AY+V V + R L ++
Sbjct: 1069 GSVSADSALIQRKLQRNKQVVRDSFEEWEEAYKVEAERRTVDEIFMREALVEAKKA---A 1125
Query: 289 DALQLEVGVSVIRSGRIDAMLIGYNFPE 206
D ++ VG ++ G+I A GYN E
Sbjct: 1126 DTWEVPVGAVLVHDGKIIAR--GYNLVE 1151
>At2g31580.1 68415.m03858 expressed protein contains Pfam profile:
PF04446 family of unknown function (DUF549)
Length = 567
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +2
Query: 482 LVDSVLDVVRKEAEGCDCLQGF 547
+++SV VVRKEAE C+CLQ F
Sbjct: 1 MINSV-GVVRKEAENCNCLQVF 21
>At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein
contains Pfam profile: PF01068 ATP dependent DNA ligase
domain
Length = 1417
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 168 SKEVNAETRLGLSSGKLYPMSMASIRPERITETPTSS 278
S N+ET L L++ KLY +++SI P+ + PTSS
Sbjct: 15 SNSDNSET-LNLNTTKLYSSAISSISPQFPSPKPTSS 50
>At1g55690.3 68414.m06377 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein similar to
similar to phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus] and Phosphatidylinositol
Transfer Protein GB:2780955 GI:2780955 [Saccharomyces
cerevisiae]
Length = 621
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -3
Query: 217 NFPELSPNLVSALTSLDMNYFPHFFCKLY 131
NF + NLV+A++ +D +Y+P ++Y
Sbjct: 230 NFTPTAANLVAAMSKIDNSYYPETLHRMY 258
>At1g55690.2 68414.m06376 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein similar to
similar to phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus] and Phosphatidylinositol
Transfer Protein GB:2780955 GI:2780955 [Saccharomyces
cerevisiae]
Length = 625
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -3
Query: 217 NFPELSPNLVSALTSLDMNYFPHFFCKLY 131
NF + NLV+A++ +D +Y+P ++Y
Sbjct: 230 NFTPTAANLVAAMSKIDNSYYPETLHRMY 258
>At1g55690.1 68414.m06375 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein similar to
similar to phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus] and Phosphatidylinositol
Transfer Protein GB:2780955 GI:2780955 [Saccharomyces
cerevisiae]
Length = 625
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -3
Query: 217 NFPELSPNLVSALTSLDMNYFPHFFCKLY 131
NF + NLV+A++ +D +Y+P ++Y
Sbjct: 230 NFTPTAANLVAAMSKIDNSYYPETLHRMY 258
>At5g45380.1 68418.m05577 sodium:solute symporter family protein
contains Pfam profile: PF00474 sodium:solute symporter
family
Length = 694
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 247 GRIDAMLIGYNFPELSPNLVSALTSLDMNY 158
GR+D G N P L+ NLV+ LT NY
Sbjct: 513 GRVDLDSTGKNGPMLAGNLVAILTVRPQNY 542
>At4g20990.1 68417.m03038 carbonic anhydrase family protein similar
to storage protein (dioscorin) [Dioscorea cayenensis]
GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 267
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 197 GAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAILV 346
G + W I+ + TG Y DL ER+++ +++A +Y P ++
Sbjct: 45 GPEGWGKINPHWKVCNTGRYQSPIDLTNERVSLIHDQAWTRQYKPAPAVI 94
>At1g67530.1 68414.m07694 armadillo/beta-catenin repeat family
protein / U-box domain-containing family protein
contains Pfam domain, PF00514:
Armadillo/beta-catenin-like repeats and Pfam, PF04564:
U-box domain
Length = 782
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = -3
Query: 340 DSPRHVLSSSRLVIVHVDALQLEVGVSVIRSGRIDAMLIGYNFPELSPNLVSALTS 173
D + V+ SS+ V V LQ E+ ++DA+ YN SPN+ + L+S
Sbjct: 541 DEAKSVIGSSQAVPFLVQLLQKEIETQC----KLDALHALYNLSTYSPNIPALLSS 592
>At1g46984.1 68414.m05220 F-box protein-related contains weak hit to
Pfam PF00646: F-box domain; contains weak hit to TIGRFAM
TIGR01640 : F-box protein interaction domain
Length = 370
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 313 WRKVRASGYPCGPRARDNGLC 375
WRK+ S YP PR + NG+C
Sbjct: 202 WRKIEYS-YPHYPRKKSNGIC 221
>At1g27070.1 68414.m03300 5'-AMP-activated protein kinase-related
contains weak similarity to Swiss-Prot:Q9QZH4
5'-AMP-activated protein kinase, beta-2 subunit (AMPK
beta-2 chain) [Rattus norvegicus]
Length = 532
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -3
Query: 505 YIEHRIYQLCAFGVVTLSPVVASTRLPKDKVVRTEDLTEWSG 380
+I+HR+ QL + LS V+ S R P DKVV ++D +G
Sbjct: 350 HIKHRLQQLQS----ELSSVLHSLRSPPDKVVTSKDSETTAG 387
>At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 565
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -3
Query: 541 LQTVATFSFFSDYIEHRIYQLCAFGV 464
L TVA ++FF+ ++ +++Y+ A GV
Sbjct: 24 LLTVAYYAFFAPFLGNKLYEYIAIGV 49
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,041,873
Number of Sequences: 28952
Number of extensions: 290038
Number of successful extensions: 816
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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