Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k22
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33873| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_25528| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_11502| Best HMM Match : PA (HMM E-Value=9.3)                        28   6.2  

>SB_33873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1362

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +2

Query: 281 RSVNCVPVRTSKSRELRGSILYTDCF-CLRRNGLQYDCRR--SGCQG 412
           +S NC   ++   R+ +  + Y  CF CLR+N   Y+CR   S C+G
Sbjct: 348 KSENCERFKSPGERK-KILVKYARCFRCLRKNYRSYECRSKDSNCKG 393


>SB_25528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 32

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 389 SRIEGRSDANKSNQYTKYYRVT 324
           +R+E  S AN +++YT+YY+ T
Sbjct: 9   TRVENESAANATSRYTEYYKKT 30


>SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 132 LNFGNLLNVHLRKVH*NFASTILKCTKI 49
           + FG+ LN + RK H N AST+   TK+
Sbjct: 12  IKFGSNLNFNKRKFHSNCASTVAPDTKL 39


>SB_11502| Best HMM Match : PA (HMM E-Value=9.3)
          Length = 511

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 269 LKMKRSVNCVPVRTSKSRELRGSILYTDCF--CLRR 370
           L + R   C+  R   SR+ RG  +YT C+  CLR+
Sbjct: 395 LSLYRRHECL-FRVKTSRQCRGEFVYTSCYRCCLRK 429


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,198,903
Number of Sequences: 59808
Number of extensions: 391945
Number of successful extensions: 871
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)