Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k22
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62340.1 68414.m07034 subtilisin-like serine protease / abnor...    29   2.2  
At2g28460.1 68415.m03457 DC1 domain-containing protein contains ...    29   2.9  
At1g66440.1 68414.m07548 DC1 domain-containing protein contains ...    29   2.9  
At1g66920.1 68414.m07605 serine/threonine protein kinase, putati...    29   3.8  
At4g38940.1 68417.m05518 kelch repeat-containing F-box family pr...    28   6.7  
At4g37680.1 68417.m05329 expressed protein contains Pfam domain,...    27   8.8  

>At1g62340.1 68414.m07034 subtilisin-like serine protease / abnormal
           leaf shape1 (ALE1) identical to subtilisin-like serine
           protease [Arabidopsis thaliana] GI:16444944
          Length = 832

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 300 QSGPRKAGSYAVVFCILIAFVCVGTAFNTTAAEVAAKGRN 419
           ++ PRK  SY+ +  I+  FV V  A  + A E   KG N
Sbjct: 2   ETNPRKLRSYSYICLIVCIFVLVVCAILSRAEEKEGKGEN 41


>At2g28460.1 68415.m03457 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 704

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
 Frame = +2

Query: 353 CFCLRRNGLQYDCRRSGCQG--SQLCQTLPRPLCEPAHVACTSHFKNPHAESLRAICKMQ 526
           C  L + G  Y+C + GC+      C T   PL   +H         P  +   ++CK  
Sbjct: 490 CIGLCKGGFFYECGKQGCKFMLHVQCATTSEPLVHESHRHPLFLTSKPGEKIRCSVCKDS 549

Query: 527 AKLKNC 544
            +  NC
Sbjct: 550 EETFNC 555


>At1g66440.1 68414.m07548 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 726

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
 Frame = +2

Query: 224 CYYFLEYEYKSH*RFLKMKRSVNCVPVRTSKSRELRGSILYTDCFCLRRNGLQYDCRRSG 403
           C + L  E  +  R ++     + + + TS + +     L + C  L   G  Y+C R G
Sbjct: 469 CNFILHEECANFSRKIQHPIHPHLLTLVTSATDKANTHDLCSACPWLFTTGFFYECHREG 528

Query: 404 CQGS--QLCQTLPRPLCEPAH 460
           C+ +    C T+  PL   +H
Sbjct: 529 CRFNLHVRCGTISEPLVHGSH 549


>At1g66920.1 68414.m07605 serine/threonine protein kinase, putative
           similar to receptor serine/threonine kinase PR55K
           gi|1235680|gb|AAC49208; contains protein kinase domain,
           Pfam:PF00069; contains serine/threonine protein kinase
           domain, INTERPRO:IPR002290
          Length = 609

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 151 LVLFLYFEFWKFIKCAFAESSLKFCINHFK 62
           LVLFL+F  +  + CA ++ +L +C + F+
Sbjct: 9   LVLFLFFSLFYHLPCASSKQTLGWCESQFQ 38


>At4g38940.1 68417.m05518 kelch repeat-containing F-box family
           protein low similarity to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 370

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 679 KQRKPFNCLEQCLCISL-REQCNVIFNYILYS*KNGSSF 566
           K+R  F C EQCL I++ ++Q + I  + L    NG  F
Sbjct: 62  KRRSFFGCTEQCLYIAISKDQTSDIHWFTLCRKPNGQQF 100


>At4g37680.1 68417.m05329 expressed protein contains Pfam domain,
           PF03006: Uncharacterised protein family (Hly-III /
           UPF0073)
          Length = 385

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 325 LPAFRGPDWNTVHASLHFEKSLVGFILVL*KVV 227
           LP F+ P++  V ASL F     G   +L K++
Sbjct: 274 LPVFQSPEFRVVRASLFFGMGFSGLAPILHKLI 306


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,099,980
Number of Sequences: 28952
Number of extensions: 271273
Number of successful extensions: 622
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)