Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10k21
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 35 0.010
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos... 34 0.023
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 32 0.094
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 30 0.29
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 29 0.87
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu... 29 0.87
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy... 28 1.2
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 28 1.5
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 28 1.5
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 28 1.5
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 28 1.5
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 27 2.0
SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi... 27 2.0
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 27 2.7
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 27 3.5
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 27 3.5
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 27 3.5
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 27 3.5
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 26 4.7
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 26 4.7
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 26 4.7
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.1
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 26 6.1
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 8.1
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot... 25 8.1
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces... 25 8.1
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 25 8.1
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 25 8.1
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 35.1 bits (77), Expect = 0.010
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = -2
Query: 661 W*LRSFLTVS--SLKYFVFKIFQYCFLISSSSAVILTILFFLVSLLIS 524
W RSF+T + F+F +F + F ISSSS + +L+F SLLIS
Sbjct: 554 WWWRSFITPGFCGIYVFIFSVFYWFFKISSSS-LATAVLYFGYSLLIS 600
>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 196
Score = 33.9 bits (74), Expect = 0.023
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +3
Query: 204 PSSDMSADETSTPKNNKTLDVSDESGHELEADVDDIKEKKFLDEAIKAILDPHAFIPKNQ 383
P S++ ++ P +NK + +D L+ D D + EK+ +++K + ++ I +
Sbjct: 81 PISELEKEKLERPLSNKKKEKNDHKAESLKHDYDSVGEKRISKDSVKHLDKTYSSIDSKK 140
Query: 384 D 386
D
Sbjct: 141 D 141
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 31.9 bits (69), Expect = 0.094
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 162 GIISTAVSVQFQTNPSSD-MSADETSTPKNNKTLDVSDESGHE 287
GII+ Q ++PS D +S E STP + T+DV+D E
Sbjct: 3 GIITPQKQKQLMSSPSRDPLSTTELSTPTSQTTVDVNDTKKSE 45
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 30.3 bits (65), Expect = 0.29
Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Frame = +3
Query: 312 KEKKFLDEAIKAILDPHAFIPKNQDELESYKLQLDELNKSNISLDSFLSEMDNL--SLEV 485
K + LD+ +K + A + ++ K L E+++ N + SF+ E++ L S++
Sbjct: 104 KSEVELDKHVKQL---QAAVDSGTLKIVDEKKYLREISQCNRTRKSFV-ELNALQTSIDT 159
Query: 486 CKTSQKALWSYVSDINNETKKNKMVRITAEEDEIKKQ 596
+ L ++D ++ +K V I +E DE++KQ
Sbjct: 160 IRNELNELRDQLNDSESKKLSDKFVEIRSELDEVRKQ 196
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 28.7 bits (61), Expect = 0.87
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 492 TSQKALWSYVSDINNETKKNKMVRITAEEDEIK 590
T+QK W Y DI E+ + K + EE+EI+
Sbjct: 1280 TTQKLFWPYDVDIIRESYRTKRLHELDEEEEIE 1312
>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 28.7 bits (61), Expect = 0.87
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +3
Query: 249 NKTLDVSDESGHELEADVDDIKEKKFLDEAIKAILDPHAFIPKNQDELESYKLQLDELNK 428
+K +D SDE ++ ++ ++ +KFL ++ P IP E++ LD
Sbjct: 129 DKKVDGSDEESRMMQKNLTELIYQKFL-----LVVQPRHLIPVGDQEMQLRIKHLDRRKS 183
Query: 429 SNISLDSFLSEM-DNLSLEV 485
N+S E+ D+++LE+
Sbjct: 184 ENVSEIKKNREVDDSVALEM 203
>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 219 SADETSTPKNNKTLDVSDESGHELEADVDDIKEKK 323
+AD+ + + + +++SD G ELE D D I+++K
Sbjct: 57 TADQENESEGSDEVELSDLEGIELEEDADLIRKRK 91
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 276 FHRRHLKFYYFSVCSSRLLTYLTKDLFG 193
F RR L + F C+S +L YL+ +FG
Sbjct: 267 FFRRMLNAFIFIFCASPMLHYLSNIIFG 294
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 276 FHRRHLKFYYFSVCSSRLLTYLTKDLFG 193
F RR L + F C+S +L YL+ +FG
Sbjct: 267 FFRRMLNAFIFIFCASPMLHYLSNIIFG 294
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 276 FHRRHLKFYYFSVCSSRLLTYLTKDLFG 193
F RR L + F C+S +L YL+ +FG
Sbjct: 239 FFRRMLNAFIFIFCASPMLHYLSNIIFG 266
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 276 FHRRHLKFYYFSVCSSRLLTYLTKDLFG 193
F RR L + F C+S +L YL+ +FG
Sbjct: 267 FFRRMLNAFIFIFCASPMLHYLSNIIFG 294
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 27.5 bits (58), Expect = 2.0
Identities = 22/85 (25%), Positives = 43/85 (50%)
Frame = +3
Query: 456 SEMDNLSLEVCKTSQKALWSYVSDINNETKKNKMVRITAEEDEIKKQYWNILKTKYLRDD 635
+ +D LSL+ TS L +Y S NE K+ K I +E+++ + + T++ + +
Sbjct: 22 NSIDGLSLKKT-TSPFILTAYPS---NEEKEVKETDIVPDENKVNELDVHKQSTEFSKQE 77
Query: 636 TVKNDRNYQRKIRIIKERGTNVQMP 710
+ ND + I++I E + +P
Sbjct: 78 SASNDDD--TNIQLIPENNMKIVVP 100
>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = +3
Query: 375 KNQDELESYKLQLDELNKSNISLDSFLSEMDNLSLEVCKTSQKALWSYVSDINNETKKNK 554
K ELE+ L L E SN+SL S++ + + K S + + D + + +N+
Sbjct: 9 KLDSELEAKVLHLLEGQVSNLSLPSYIKHLKVVDFHFGKVSPQITIQEIGDPDPQFYENE 68
Query: 555 MVRITAEEDE 584
+ +E E
Sbjct: 69 AFELANQELE 78
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +3
Query: 582 EIKKQYWNILKTKYLRDDTVKNDRNYQRKIRIIKERGTNVQMP 710
++ +YW I KTK +R+ + N+R + ++ I+ ++ P
Sbjct: 509 DVATEYWKI-KTKDIRESHILNNRRILKSLQFIETELPMIRKP 550
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +3
Query: 303 DDIKEKKFLDEAIKAILDPHAFIPKNQDELESYKLQLDELNKSNISLDSFLSEMD 467
D +K K D AFI + Q+ELE + D+L +S SE D
Sbjct: 175 DQLKVGKLEDTLYLGPTTSEAFIERLQNELELESISEDDLYSKRLSPSVSYSEFD 229
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 435 ISLDSFLSEMDNLSLEVCKTSQKALWSYVSDI 530
ISL S + LSL+ CK +K LW +S +
Sbjct: 1136 ISLRRGWSSVATLSLDTCKMIEKRLWPTMSPL 1167
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 258 LDVSDESGHELEADVDDIKEKKFLDEA-IKAILDPHAFIPKNQDELESY 401
+ + D+ +EL +V + E + E + L H +PK+Q +LE+Y
Sbjct: 405 ITIPDDGLNELNNNVVEKAEPAPVSEIPLSKTLTSHKIVPKHQVDLENY 453
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = -2
Query: 652 RSFLTVSSLKYFVFKIFQYCFLISSSSAVILTI 554
RS LT S VF Y F ISSSS I+ I
Sbjct: 232 RSTLTFSFYPKHVFSTSHYVFAISSSSLQIIDI 264
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 26.6 bits (56), Expect = 3.5
Identities = 19/79 (24%), Positives = 40/79 (50%)
Frame = +3
Query: 363 AFIPKNQDELESYKLQLDELNKSNISLDSFLSEMDNLSLEVCKTSQKALWSYVSDINNET 542
A +PK + +L K D+L KS+ + + LS++ E+ K + L + I+ +
Sbjct: 503 AEVPKLESQLSQVKKSNDDLQKSSRDVAANLSDVKAKVSEIRKAYDEEL-AKAKQISLDI 561
Query: 543 KKNKMVRITAEEDEIKKQY 599
+ NK A+ +++ ++Y
Sbjct: 562 ETNK-----AQTEQVNREY 575
Score = 25.4 bits (53), Expect = 8.1
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 3/110 (2%)
Frame = +3
Query: 273 ESGHELEADVDDIKEKKFLDEAIKAILDP-HAFIPKNQDELESYKLQLDELNKSNISLD- 446
+ G LE V + + K + E+ A + + + + L LQLDE+ + +SLD
Sbjct: 591 QKGEVLEQVVAESEAAKNMVESSNASIQQLKSEVADKEQTLAQLHLQLDEMTQRLVSLDE 650
Query: 447 -SFLSEMDNLSLEVCKTSQKALWSYVSDINNETKKNKMVRITAEEDEIKK 593
S L LE + K + ++ +E K ++ AE+ E+ K
Sbjct: 651 ESKAVSQRKLDLEYKINNSKTQLATATEEYHEHSK----QLEAEKQELSK 696
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 195 QTNPSSDMSADETSTPKNNKTLDVSDESGHELEADV 302
Q N S++E +T +NN +V DE+ ++LE+ V
Sbjct: 250 QVNDEKKQSSEEDTT-ENNSAAEVIDETVNDLESAV 284
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 288 LEADVDDIKEKKFLDEAIKAILDPHAFIPKNQDELESYKL 407
L A + ++KK LD KA L PK +D+L YK+
Sbjct: 492 LTACLASSRKKKGLDAIDKAFLKALRNYPKAKDQLSKYKV 531
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +3
Query: 336 AIKAILDPHAFIPKNQDELESYKLQLDELNKSNISLDSFLSEMDNLSLEVCKTSQK 503
AIK +DP A +N++ E K + + K+ IS + E+D + +V S K
Sbjct: 746 AIKFTVDPVALRARNEESNEENKKPVIKNGKAEISAEPTKEEIDIYNEKVLACSIK 801
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 201 NPSSDMSADETSTPKNNK 254
NPSS + ++ +STPK NK
Sbjct: 182 NPSSVLPSNSSSTPKENK 199
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 6.1
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +3
Query: 273 ESGHELEAD-VDDIKEKKFLDEAIKA---ILDPHAFIPKNQDELESYKLQLDELNKSN 434
+SG L ++ DD++E + L E ++ I + + I K + + +KL DEL + N
Sbjct: 206 KSGIPLSSEHSDDVEEDRVLSEKMELFQWITEENLDIKKQKSSSKFFKLAADELRRIN 263
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 456 SEMDNLSLEVCKTSQKALWSYVSDINNETKK-NKMVR 563
S++ N E K +KA W ++S+ +NE KK N +R
Sbjct: 722 SDLRNCDFEPVK-KRKADWDHLSNHDNEVKKENNRIR 757
>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 25.4 bits (53), Expect = 8.1
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +3
Query: 246 NNKTLDVSDESGHELEADVDDIKEKKFLDEAIKAILDPHAFIPKNQDELESYKLQLDELN 425
N+ +L VS + H + DV+ + F LDP + I L LQ L
Sbjct: 17 NSSSLPVSSKFSHTNDPDVEGVDNDSFSKALCNKDLDPSSTIRSVISSLLD-SLQDKALQ 75
Query: 426 KS-NISLDSFLSE 461
+S N SL L E
Sbjct: 76 QSPNTSLSKLLLE 88
>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 372 PKNQDELESYKLQLDELNKSNISLDS 449
PK+ ++LE + Q+ + KSN+ LD+
Sbjct: 192 PKSFEQLEQLEAQIQKKLKSNVPLDT 217
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 468 NLSLEVCKTSQKALWSYVSDINNETKKNKMVRITAEEDEIKKQ 596
N L+VC T + A+W+Y N+ T+ N V ++++ + + Q
Sbjct: 321 NSVLDVCTTWEDAMWAY---YNSMTQYNLDVYLSSKAPQTETQ 360
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/79 (21%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = +3
Query: 198 TNPSSDMSADETSTPKNNKTL-DVSDESGHELEADVDDIK-EKKFLDEAIKAILDPHAFI 371
+ P+ +AD+ + ++ + + +D G L+ + ++K +KK ++ I+ ++D +
Sbjct: 1763 SGPAGLAAADQLNRAGHHVVIYERADRPGGLLQYGIPNMKLDKKVVERRIQLMIDEGIEV 1822
Query: 372 PKNQDELESYKLQLDELNK 428
N + ++ + LDEL+K
Sbjct: 1823 LTNVEVGKNGDVSLDELHK 1841
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,864,931
Number of Sequences: 5004
Number of extensions: 59768
Number of successful extensions: 283
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -