Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k20
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51534| Best HMM Match : 7tm_1 (HMM E-Value=0)                       33   0.17 
SB_50766| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.30 
SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11)                 32   0.53 
SB_9137| Best HMM Match : SCP (HMM E-Value=3.6e-18)                    31   0.70 
SB_2118| Best HMM Match : PAN (HMM E-Value=0.0011)                     31   0.92 
SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)                     29   2.8  
SB_11293| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_51534| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 795

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 18/72 (25%), Positives = 37/72 (51%)
 Frame = -3

Query: 677 LEMESLCAKTKSDLSDRPPEVFFLSVPSFDSLFSVFAVTMTSFGMISLVRASLLFKGAKT 498
           +EM+S C  + S ++  PP+ F ++  +  S F V  + +T FG + ++ A  +F   + 
Sbjct: 1   MEMKSCCNDSNSSINSPPPK-FSITTIAVSSTFVVILLLLTVFGNVLVIMAFKVFHRMRQ 59

Query: 497 WVSFWILVTACT 462
             + ++   A T
Sbjct: 60  VTNCFVASLAVT 71


>SB_50766| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 322 FNPNADSRANNEILSKDDPATFVDLKNFMASCFKGISENVVVADIPN 462
           F+   D+   NE+LS    +T  D+ NF  SC   +++ V+V  I N
Sbjct: 144 FSTYFDAGYTNELLSNSGYSTLTDIGNFRKSCSSNVAQTVLVHFIFN 190


>SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11)
          Length = 806

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
 Frame = +1

Query: 310 KSISFNPNADSR-ANNEILSKDDPATFVDLKN-FMASCF---KGISENVVVADIPNVHAV 474
           + ++  PN  S+ A  +I+ K +    VDL++  +  C    KGIS+  ++ D+P+V A 
Sbjct: 729 EGLATQPNQQSKMAVADIVIKQEAVEAVDLQDRILELCKGTPKGISDRTILQDMPSVSAE 788

Query: 475 TRIQNDTQVLAPLNN 519
            R+    ++L+ + N
Sbjct: 789 QRVAAINRLLSTVRN 803


>SB_9137| Best HMM Match : SCP (HMM E-Value=3.6e-18)
          Length = 708

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 18/72 (25%), Positives = 35/72 (48%)
 Frame = +1

Query: 448 ADIPNVHAVTRIQNDTQVLAPLNNNDARTNEIIPNEVIVTAKTENKLSKLGTDKKKTSGG 627
           AD P+ H VT    DT+    + N+D   + +   ++ V    E+K++    ++++ S  
Sbjct: 270 ADTPSNHDVTEFNGDTEGDVTITNDDENADTVQHGKISVDDNRESKVANKLAEEEEES-- 327

Query: 628 LSERSDLVLAQR 663
             E  D+V A +
Sbjct: 328 -KEAEDMVSASK 338


>SB_2118| Best HMM Match : PAN (HMM E-Value=0.0011)
          Length = 521

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +1

Query: 517 NNDARTNEIIPNEVIVTAKTENKLSKLGTDKKKTSGGLSERSDLVLAQRDSI 672
           N D R+ ++  ++      T+ + +++ TDK+ T G   +RS  V   + SI
Sbjct: 443 NTDQRSTQVNTDQRSTHVNTDQRSTQVNTDKRSTQGNTDQRSTQVDTDQRSI 494


>SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)
          Length = 1447

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 484  QNDTQVLAPLNNNDARTNEIIPNEVIVTAKTENKLSKLGTDKK-KTSGGLSERSDLVLAQ 660
            +N+T+ LA   N   + NE++  E+I  A   + L +   +KK KT   +    D    +
Sbjct: 1166 ENETKTLAERMNEVFQENEMLRKELIAAADRIDNLQRRSDEKKTKTQAKVQALRDHFARE 1225

Query: 661  RDSISS 678
            + S+ S
Sbjct: 1226 KRSLES 1231


>SB_11293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +1

Query: 544 IPNEVIVTAKTENKLSKLGTDKKKTSGGLSERSDLVLAQRDSISSIGSNVCRI 702
           IPN V  T KT N+L ++    K +SG   E    VL   D     GS+  R+
Sbjct: 233 IPNNVDTTPKTGNRLCQIFVFNKTSSGQTEE----VLYVEDKNGKNGSSCTRV 281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,289,181
Number of Sequences: 59808
Number of extensions: 418999
Number of successful extensions: 1180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)