Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k20
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97007-3|AAB52299.1|  374|Caenorhabditis elegans Hypothetical pr...    33   0.20 
U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical pr...    33   0.27 
AF036699-2|AAB88361.2|  109|Caenorhabditis elegans Hypothetical ...    32   0.47 
Z92838-4|CAB07410.1| 1012|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical ...    29   4.3  
U40799-4|AAA81482.1|  426|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z82056-5|CAB04856.1|  378|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z81129-9|CAB03410.1|  378|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U88310-2|AAB42338.2|  635|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>U97007-3|AAB52299.1|  374|Caenorhabditis elegans Hypothetical
           protein ZC196.9 protein.
          Length = 374

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = -3

Query: 641 DLSDRPPEVFFLSVPSFDSLFSVFAVTMTSFGMISLVRASLLFKGAKTWVSFWIL--VTA 468
           D+SD      + SV S   LF V  +  T   M  LV + LL++  K+   FW L  +T 
Sbjct: 58  DISDSEKNWLYYSVVS---LFVVSTIGATILTMSFLVLSILLWRHFKSMRFFWFLTQLTT 114

Query: 467 CTFGISATTTFSLIP 423
             F ISA   F  IP
Sbjct: 115 SAFVISAANLFINIP 129


>U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical protein
            B0412.3 protein.
          Length = 1107

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 4/148 (2%)
 Frame = +1

Query: 268  IRQIVTVKDVSNALKSISFNPNADSRANNEILSKDDPATFVDLKNFMASCFKGISENVVV 447
            I Q++ + DVS  LK+  F P+A+  AN+      DP   + L +   S  K + + VV+
Sbjct: 626  IEQVIRLNDVSVHLKAKKFPPDANQTANDADCLIYDP---IHLGSVEVSKSKPL-QRVVL 681

Query: 448  ADIPNVHAVTRIQNDTQVLAPLNNNDARTNEIIPNEVIVTAKTEN----KLSKLGTDKKK 615
             D+ N      I   T+V   L N      E   N +      EN    +  K+G  K  
Sbjct: 682  LDLKNAKQ-NWIVTVTKVTLDLGNAIRGNIEFDENALNRNCHVENIIGLEFLKIGVAKTS 740

Query: 616  TSGGLSERSDLVLAQRDSISSIGSNVCR 699
                  E+ D ++ +  S      N C+
Sbjct: 741  VKLESVEKVDCLIGEVTSTELTIRNTCK 768


>AF036699-2|AAB88361.2|  109|Caenorhabditis elegans Hypothetical
           protein F58F6.5 protein.
          Length = 109

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -3

Query: 587 SLFSVFAVTMTSFGMISLVRASLLFKGAKTWVSFWIL--VTACTFGISATTTFSLIP 423
           SLF V  V  T   +  LV + LL++  K+   FW L  +T   F ISA+  F  IP
Sbjct: 31  SLFVVSTVVATILTLSFLVLSILLWRNFKSMRFFWFLTQLTTSAFIISASNLFINIP 87


>Z92838-4|CAB07410.1| 1012|Caenorhabditis elegans Hypothetical
           protein T03D8.5 protein.
          Length = 1012

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 254 LETPVL*TVGTDPGNSFTDDGPALSFSDTSFALSLLFTII 135
           L TP+    GTD   SFTD   A+    T+ AL L+  +I
Sbjct: 402 LSTPICGFTGTDCPKSFTDQYLAIILGCTAAALVLIIAVI 441


>Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical
           protein D1046.4 protein.
          Length = 583

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = -3

Query: 497 WVSFWILVTACTFGISATTTFSLIPLKHE--AIKFFKSTKVAGSSFDKISLFALESAFGL 324
           W    I++      I  +  F   PL     +IKF + +  AGS+   I+LF  +  F +
Sbjct: 336 WTVSLIIIVHLILKIFISRIFEKNPLLTNIYSIKFLQFSSFAGSAVIMITLFVTKFHFDI 395

Query: 323 KLIDFKAFDTSLTVT 279
           +LI + A    L++T
Sbjct: 396 QLILYAAIFAFLSLT 410


>AF003390-3|AAB54272.1| 1308|Caenorhabditis elegans Hypothetical
           protein R155.2 protein.
          Length = 1308

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
 Frame = +1

Query: 337 DSRANNEILSKDDP-ATFVDLKNFMASCFKGISENVVVADIPNVHAVTRIQNDTQVLAPL 513
           D   +NE  S+ +P AT  +  +   +  + ISE    + +  +  ++R+ N   +   L
Sbjct: 83  DIGKDNEYFSRRNPRATNSEFYSHNINETEYISEEFK-SSLIQMQMISRVTNGIYLQHGL 141

Query: 514 NNNDARTNEIIPNEVIVTAKTENKLSKLGTDK 609
           +N   +++++IP  +     T  ++S + TDK
Sbjct: 142 SNGSIKSDDLIPELLHFGTITPTQISAINTDK 173


>U40799-4|AAA81482.1|  426|Caenorhabditis elegans Hypothetical
           protein F42C5.2 protein.
          Length = 426

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/69 (27%), Positives = 30/69 (43%)
 Frame = -3

Query: 605 SVPSFDSLFSVFAVTMTSFGMISLVRASLLFKGAKTWVSFWILVTACTFGISATTTFSLI 426
           S+  F  LFSV  +T+ S     +V  + L    + W+S   L     FG+   T     
Sbjct: 178 SIEIFAKLFSVVLLTVMSLERYIIV-CTRLRHIYRAWMSLVPLAVGTIFGVLVPTIIHYF 236

Query: 425 PLKHEAIKF 399
            L+H ++ F
Sbjct: 237 YLQHFSVPF 245


>Z82056-5|CAB04856.1|  378|Caenorhabditis elegans Hypothetical
           protein T26H5.5 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 26/107 (24%), Positives = 44/107 (41%)
 Frame = -3

Query: 584 LFSVFAVTMTSFGMISLVRASLLFKGAKTWVSFWILVTACTFGISATTTFSLIPLKHEAI 405
           L S+  +  T F +I L R S+      T  +F + +  C           L PL  E  
Sbjct: 39  LISIIGILPTIFHIIVLSRKSMR---TLTINAFLLGIGICDLARMMFIIMVLGPLYTEHF 95

Query: 404 KFFKSTKVAGSSFDKISLFALESAFGLKLIDFKAFDTSLTVTIWRML 264
              +  +    ++    LFAL S F  KL+++ +   ++ + I R L
Sbjct: 96  SHLEHPECMSPNYYSTILFALISGFTGKLVEYLSIWLAVAMAIIRSL 142


>Z81129-9|CAB03410.1|  378|Caenorhabditis elegans Hypothetical
           protein T26H5.5 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 26/107 (24%), Positives = 44/107 (41%)
 Frame = -3

Query: 584 LFSVFAVTMTSFGMISLVRASLLFKGAKTWVSFWILVTACTFGISATTTFSLIPLKHEAI 405
           L S+  +  T F +I L R S+      T  +F + +  C           L PL  E  
Sbjct: 39  LISIIGILPTIFHIIVLSRKSMR---TLTINAFLLGIGICDLARMMFIIMVLGPLYTEHF 95

Query: 404 KFFKSTKVAGSSFDKISLFALESAFGLKLIDFKAFDTSLTVTIWRML 264
              +  +    ++    LFAL S F  KL+++ +   ++ + I R L
Sbjct: 96  SHLEHPECMSPNYYSTILFALISGFTGKLVEYLSIWLAVAMAIIRSL 142


>U88310-2|AAB42338.2|  635|Caenorhabditis elegans Hypothetical
           protein C24G7.2 protein.
          Length = 635

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 518 LFKGAKTWVSFWILVTACTFGISATTTFSL 429
           +F+G +    FW+++ +C+ G+  T  F L
Sbjct: 95  IFQGKRWATLFWLIMVSCSLGLLITQVFIL 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,078,243
Number of Sequences: 27780
Number of extensions: 323046
Number of successful extensions: 967
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)