Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k20
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.6  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           23   2.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.2  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = -3

Query: 500 TWVSFWILVTAC----TFGISATTTFSLIPLKHEA 408
           +WVSFWI   A     T G+++  T S    K +A
Sbjct: 262 SWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQA 296


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 232 VHKTGVSKSEHNIRQIVTVKDVSNALK 312
           V +  V+ +EH  R+ VT  DV  ALK
Sbjct: 66  VIRDAVTYTEHTKRKTVTAMDVVYALK 92


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -3

Query: 500 TWVSFWI--LVTACTFGISATTTFSL 429
           +WVSFWI    T+   G+  TT  +L
Sbjct: 262 SWVSFWIHREATSDRVGLGITTVLTL 287


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 489 VLDSGNSVYIWYISNDY 439
           + +  N+ YIW +SN Y
Sbjct: 364 IYERQNNEYIWIVSNKY 380


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = -3

Query: 500 TWVSFWI--LVTACTFGISATTTFSL 429
           +WVSFWI    T+    +  TT  ++
Sbjct: 259 SWVSFWINHEATSARVALGITTVLTM 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,675
Number of Sequences: 438
Number of extensions: 3966
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)