Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10k20
(712 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 31 0.57
At1g80560.1 68414.m09445 3-isopropylmalate dehydrogenase, chloro... 31 1.00
At3g28030.1 68416.m03499 UV hypersensitive protein (UVH3) / DNA-... 30 1.3
At2g39810.1 68415.m04890 expressed protein 30 1.7
At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei... 29 3.0
At3g42580.1 68416.m04420 Ulp1 protease family protein contains P... 29 4.0
At5g39090.1 68418.m04729 transferase family protein similar to a... 28 5.3
At2g06500.1 68415.m00720 hAT dimerisation domain-containing prot... 28 5.3
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 28 7.0
At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase, chloro... 28 7.0
At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase, chloro... 28 7.0
At5g49470.2 68418.m06121 protein kinase family protein contains ... 27 9.3
At4g30520.1 68417.m04333 leucine-rich repeat family protein / pr... 27 9.3
At1g67930.1 68414.m07757 Golgi transport complex protein-related... 27 9.3
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice
sites at introns 4 and 6
Length = 1017
Score = 31.5 bits (68), Expect = 0.57
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +1
Query: 538 EIIPNEVIVTAKTENKLSKLGTDKKKTSGGLS 633
+ + NE +VTA T+N L KL KK T GGLS
Sbjct: 889 KFLDNETLVTASTDNTL-KLWDLKKTTHGGLS 919
>At1g80560.1 68414.m09445 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to
3-ISOPROPYLMALATE DEHYDROGENASE PRECURSOR GB:P29102
SP|P29102 from [Brassica napus]
Length = 405
Score = 30.7 bits (66), Expect = 1.00
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -3
Query: 314 DFKAFDTSLTVTIWRMLCSDLETPVL*TVGTDPGNSFTDDGPAL 183
D K FDT +T I+ + SD + + ++G P S +D GP L
Sbjct: 273 DPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSGPGL 316
>At3g28030.1 68416.m03499 UV hypersensitive protein (UVH3) /
DNA-repair protein, putative identical to UV
hypersensitive protein [Arabidopsis thaliana]
gi|13649704|gb|AAK37472; similar to Swiss-Prot:P14629
DNA-repair protein complementing XP-G cells homolog
(Xeroderma pigmentosum group G complementing protein
homolog) [Xenopus laevis]
Length = 1479
Score = 30.3 bits (65), Expect = 1.3
Identities = 34/148 (22%), Positives = 70/148 (47%), Gaps = 3/148 (2%)
Frame = +1
Query: 223 VPTVHKTGVSKSEHNIRQIVTVKDVSNALKSISFNPNADSRANNEILSKDDPATFVDLKN 402
VP T VSK E N+ KD+S A + +++ + ANN + ++D T + K
Sbjct: 575 VPVEQNTSVSKLEANLSNQHIPKDISIA-EGVAWEEYSCKNANNSV--ENDTVTKI-TKG 630
Query: 403 FM---ASCFKGISENVVVADIPNVHAVTRIQNDTQVLAPLNNNDARTNEIIPNEVIVTAK 573
++ A + I ++++ ++ + + ++ + V L + + + E + A+
Sbjct: 631 YLEEEADLQEAIKKSLL--ELHDKESGDVLEENQSVRVNLVVDKPSEDSLCSRETVGEAE 688
Query: 574 TENKLSKLGTDKKKTSGGLSERSDLVLA 657
E L ++ KTSG +SE+S+ +A
Sbjct: 689 EERFLDEITI--LKTSGAISEQSNTSVA 714
>At2g39810.1 68415.m04890 expressed protein
Length = 865
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 577 ENKLSKLGTDKKKTSGGLSERSDLVLAQRDSISSIGS 687
+N + L T+ + SGGL RSD D ++S GS
Sbjct: 815 DNNNNVLATESRNNSGGLRWRSDETSDDEDELTSFGS 851
>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
protein-related similar to matrix-localized MAR DNA
binding protein MFP1 GI:1771158 from [Lycopersicon
esculentum]
Length = 726
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 577 ENKLSKLGTDKKKTSGGLSERSDLVLAQRDSIS 675
EN LSK G DK+ L E+ DLV +D I+
Sbjct: 240 ENSLSKAGEDKEALETKLREKLDLVEGLQDRIN 272
>At3g42580.1 68416.m04420 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 903
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +1
Query: 199 SVNELPGSVPTVHKTGVSKSEHNIRQIVTVKDVSNALKSISFNPNADSRANNEILSKDDP 378
+V E PG V GVS++E N+ V K+ N + ++F + S +K D
Sbjct: 628 TVPEHPGKKDDVVHMGVSQTEENVAHDVE-KEKKNVRRKVTFADDLKSDGTISDHTKSDD 686
Query: 379 ATFVDLK 399
F++ +
Sbjct: 687 VEFMETR 693
>At5g39090.1 68418.m04729 transferase family protein similar to
anthocyanin 5-aromatic acyltransferase from Gentiana
triflora GI:4185599, malonyl CoA:anthocyanin
5-O-glucoside-6'''-O-malonyltransferase from Perilla
frutescens GI:17980232, Salvia splendens GI:17980234;
contains Pfam profile PF02458 transferase family
Length = 448
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = -3
Query: 443 TTFSLIPLKHEAIK---FFKSTKVAGSSFDKISLFALESAFGLKL 318
T F L+ LKH+A++ F+K T V S FD + + L+S+ L
Sbjct: 29 TFFDLLWLKHKAVERVIFYKLTDVNRSLFDSVIVPNLKSSLSSSL 73
>At2g06500.1 68415.m00720 hAT dimerisation domain-containing protein
/ transposase-related low similarity to transposase
[Ipomoea purpurea] AB004906 GI:4063770
Length = 582
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/64 (29%), Positives = 35/64 (54%)
Frame = -3
Query: 500 TWVSFWILVTACTFGISATTTFSLIPLKHEAIKFFKSTKVAGSSFDKISLFALESAFGLK 321
TW+SF IL+T SA +FS + L IK + + ++ + +++ ++E A L+
Sbjct: 505 TWISFRILLTILVSVASAERSFSKLKL----IKNYLRSTMSQDRLNGLAILSIERAM-LE 559
Query: 320 LIDF 309
ID+
Sbjct: 560 KIDY 563
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 496 QVLAPLNNNDARTNEIIPNEVIVTAKTENKLSKLGTDKKK 615
+V PL+N +A+ N ++P A+TE ++ D +K
Sbjct: 182 EVSKPLDNENAKDNVLVPEIANEVARTEITCKEVADDSQK 221
>At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to SP|P29102
3-isopropylmalate dehydrogenase, chloroplast precursor
{Brassica napus}
Length = 409
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 314 DFKAFDTSLTVTIWRMLCSDLETPVL*TVGTDPGNSFTDDGPAL 183
D K FDT +T I+ + SD + + ++G P S + GP L
Sbjct: 277 DPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGL 320
>At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to SP|P29102
3-isopropylmalate dehydrogenase, chloroplast precursor
{Brassica napus}; EST gb|F14478 comes from this gene
Length = 404
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 314 DFKAFDTSLTVTIWRMLCSDLETPVL*TVGTDPGNSFTDDGPAL 183
D K FDT +T I+ + SD + + ++G P S + GP L
Sbjct: 274 DPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGL 317
>At5g49470.2 68418.m06121 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 834
Score = 27.5 bits (58), Expect = 9.3
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = +1
Query: 481 IQNDTQVLAPLNNNDARTNEIIPNEVIVTAKTENKLSKLGTDKKK---TSGGLSERSDLV 651
I ND+ + + A+T E + T + SKLG D K+ + GL + +
Sbjct: 207 ITNDSALFQDPRGSPAKTRRGQEGETSFSRVTSSVASKLGLDSKEAVVSKLGLDSQQPIQ 266
Query: 652 LAQRDSISSIGSNV 693
+A IS + S V
Sbjct: 267 VAIASKISDLASKV 280
>At4g30520.1 68417.m04333 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 648
Score = 27.5 bits (58), Expect = 9.3
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +1
Query: 394 LKNFMASCFKGISENVVVADIPNVHAVTRIQNDTQ-VLAPLNNNDARTNEIIPNEVIVTA 570
L +F+ CF ++ + + P V A+ I+N+ LNN D + + + ++T
Sbjct: 16 LYSFLFLCFSTLTLSSEPRN-PEVEALISIRNNLHDPHGALNNWDEFSVDPC-SWAMITC 73
Query: 571 KTENKLSKLGTDKKKTSGGLSE 636
+N + LG + SGGLSE
Sbjct: 74 SPDNLVIGLGAPSQSLSGGLSE 95
>At1g67930.1 68414.m07757 Golgi transport complex protein-related
similar to golgi transport complex protein (GTC90)
GB:5453670 [Homo sapiens] (stimulates in vitro Golgi
transport J. Biol. Chem. 273 (45), 29565-29576 (1998))
Length = 832
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +1
Query: 277 IVTVKDVSNALKSISFNPNADSRANNEILSKDDPATFVDLKNF-MASCFKGISENV--VV 447
++ ++++ AL +++ E PAT ++NF + +GI ++ +V
Sbjct: 506 LLVLREIGKALSNLAQRAECQISTGPETRQISGPATSTQIRNFTLCQHLQGIHTHISSMV 565
Query: 448 ADIPNV 465
AD+P++
Sbjct: 566 ADLPSI 571
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,928,423
Number of Sequences: 28952
Number of extensions: 294486
Number of successful extensions: 887
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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