Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k16
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    29   0.82 
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    29   0.82 
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    28   1.1  
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ...    28   1.1  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    28   1.4  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    27   1.9  
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    27   2.5  
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.4  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    26   4.4  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    26   4.4  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    26   4.4  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    26   5.8  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    26   5.8  
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    26   5.8  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    26   5.8  
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    25   7.6  
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    25   7.6  

>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +3

Query: 432 IHSPKFIPVDS-KNMIIDNNYENFVDKLEKLTIESSLENEFSTNEMFNKNEIKENSSLND 608
           I S +  P+ S KN +  NN  +   +  K      + +E S +  FN  EI+  +S   
Sbjct: 544 IRSSEVRPLKSQKNTVSINNKIDTSKRRRKGKRRKRVSDEHSASSNFN--EIESQASFEQ 601

Query: 609 NQEILILSEASMSLSGVFSSP 671
           NQ + ILSE  + +    + P
Sbjct: 602 NQTLDILSENIVEIQDKSTDP 622


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +3

Query: 486 NYENFVDKLEKLTIESSLENEFSTNEMFNKNEIKENSSLNDNQEIL 623
           N +N VD++ K  I S  +   + +  F+KNE+K++S+L   + +L
Sbjct: 246 NIDNKVDEILKDNIVSYHQPSGTLSLCFSKNELKKHSNLTKEELLL 291


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
 Frame = +3

Query: 351 QAERELLTVTYSSENTWEIDFCPWENIIHSPKFIPVDSKNMIIDNNYENFVDKLEKLTIE 530
           Q ++ L  +  S E T E D      +  SP     D+    IDN+     DK+E+++IE
Sbjct: 207 QKKKPLRVIELSDEETNEDDL-----LGQSPTACTTDAN---IDNSIPENSDKIEEVSIE 258

Query: 531 SSLENEFSTNEMFNKNEIKENSSLNDN--QEILILSEASMSLSGVFSS 668
           SS  +E   +EM ++ +++  + LN++  QEI+ +S     +   F S
Sbjct: 259 SSGPSEVE-DEM-SEYDVRVLNFLNESTLQEIVEVSGCESKVVEYFIS 304


>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 392

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/63 (25%), Positives = 33/63 (52%)
 Frame = +3

Query: 120 IDKDISLRNSYLLESQSLEEDTDLKTKYKTFLWFLNYGKIFVTRLTKDLIISLASYVYSG 299
           ++ ++ LRN   +E+Q +        KY TFL F+ +   F TRL+  + +  + + Y  
Sbjct: 329 VNVEVPLRNIPSIETQKV-----FWPKYNTFLRFMEFKGKFYTRLSGAVYLEESDFYYIA 383

Query: 300 QLL 308
           +++
Sbjct: 384 KVI 386


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 435 HSPKFIPVDSKNMIIDNN-YENFVDKLEKLTIESSLENEFSTNEMFNKNEIKEN 593
           HS   +  +S + I DN+ Y N ++    L +  +L+N  +TN+ +  + ++EN
Sbjct: 639 HSDTSVKSNSPSSIFDNSGYLNSLNN-SILQMHQNLQNSSNTNDQYKFDSVQEN 691


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/65 (20%), Positives = 32/65 (49%)
 Frame = +3

Query: 456 VDSKNMIIDNNYENFVDKLEKLTIESSLENEFSTNEMFNKNEIKENSSLNDNQEILILSE 635
           ++S   + +NN +   ++++ L +ES  E E  +++  +K       S N +  +L  + 
Sbjct: 41  LESNIAVSENNIKYLRERIDALKVESGSERESQSDKDSSKKYSDSAKSTNSDDHLLSYNR 100

Query: 636 ASMSL 650
           ++  L
Sbjct: 101 SAFDL 105


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 246 TRLTKDLIISLASYVYSGQLLPKHITDLMHTQKILQAERELL 371
           T L   +++S  +Y     LLP   T  +HT+ I+Q  R +L
Sbjct: 112 TSLFNVIVVSPRNYFLFTSLLPSTATGSVHTRSIVQPIRYML 153


>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 430

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +3

Query: 486 NYENFVDKL--EKLTIESSLENEFSTNEMFNKNEIKENSSLNDNQEILI 626
           NYE +  KL  +  TIE SLE E  T    N    KE+S   D    +I
Sbjct: 171 NYEAYETKLLEDASTIEKSLEKEVKTIYDSNIASPKESSDAIDADHAMI 219


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +3

Query: 486 NYENFVDKLEKLTIESSLENEFSTNEMF---NKNEIKENSSLNDNQEILILSEASMSLSG 656
           NY     +LEK+ ++ S ++  + NE F   N  E ++N S + N++  +  +       
Sbjct: 602 NYTLRFPRLEKVRLDRSWKDALTINEFFTLKNAVEKQDNVSFHVNKKRKVSQKREKQKKF 661

Query: 657 VFSSPT 674
           ++  PT
Sbjct: 662 LYDEPT 667


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 423 ENIIHSPK-FIPVDSKNMIIDNNYENFVDK 509
           E++I+ PK  I  + ++ + D  YENFV K
Sbjct: 27  EDLIYRPKKIIKTNQEDAVHDLKYENFVSK 56


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 992

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +3

Query: 435  HSPKFIP---VDSKNMIIDNNYENFVDKLEKLTIESSLEN-EFSTNEMFNKNEIKE 590
            HSP F+    +  K +    NYE F+D L  L  E+++E  E  ++ ++  + I +
Sbjct: 868  HSPDFLAWCKISLKGLNEGVNYEEFLDMLLSLPAENNVETFEIISDSIYANSTIMD 923


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 78  SLNVSNNMNDSQKFIDKDISLRNSYLLESQSLEEDTD 188
           S+ V+ N NDS +    ++  RN+   +SQSL+  T+
Sbjct: 42  SIGVTENGNDSPEAFKNELDNRNN--ADSQSLQSSTE 76


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/44 (34%), Positives = 29/44 (65%)
 Frame = +3

Query: 3   VSVYVRNVTLFPQLICAIWY*FYILSLNVSNNMNDSQKFIDKDI 134
           VSV   +V+LF + I +I   F++LSL+    + ++Q+++D +I
Sbjct: 3   VSVLTFHVSLFLKRILSIA--FFLLSLSTLLRIVNAQQYVDNNI 44


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 540 ENEFSTNEMFNKNEIKENSSLNDNQEILILSEAS 641
           ENE +     NKNE    +SL  N+EI+   E S
Sbjct: 133 ENEETKETTTNKNESLPGTSLKRNREIIEKEERS 166


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 102 SYYYLHLNLRCKINTKLHKSIEE 34
           ++YY+ L L C +   LH++I E
Sbjct: 335 AWYYMKLGLNCCLRLGLHRNITE 357


>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +3

Query: 219 FLNYGKIFVTRLTKDLIISLASYVYSGQLLPKHITDLMHTQKILQAERELLTVTYSSENT 398
           +L  G     RL   LII+  +    G ++P     L   Q  L +   +++ + S EN 
Sbjct: 167 YLTSGASHAARLIMTLIIARPT---DGVMVPAPQYPLYGAQIDLMSG-SMVSYSLSEENN 222

Query: 399 WEIDF 413
           W+IDF
Sbjct: 223 WDIDF 227


>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 4/123 (3%)
 Frame = +3

Query: 111 QKFIDKDISLRNSYLL-ESQSLEEDTDLKTKYKTFL--WFLNYGKIFVTRLTKDLIISLA 281
           Q   D+D  ++ SY+  ES  L E  +        L     + G +F  +   + + S  
Sbjct: 40  QSLTDRDFDVKTSYIKDESAKLFEYGERLYDNLILLSSQSKSLGPVFSPKSLLEFVQSGG 99

Query: 282 S-YVYSGQLLPKHITDLMHTQKILQAERELLTVTYSSENTWEIDFCPWENIIHSPKFIPV 458
           + +V +G  LP+ I +L     +  AER+ + V + +      D    + I  +P  I  
Sbjct: 100 NLFVVAGSQLPEGIRELGRQLDMFLAERQSVVVDHFNHAEGSDDIILLDGISENPYIISD 159

Query: 459 DSK 467
           +++
Sbjct: 160 ETR 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,818
Number of Sequences: 5004
Number of extensions: 52461
Number of successful extensions: 209
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)