Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10k16
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153 30 2.0
02_03_0020 - 13996688-13996785,13997168-13997217,13997516-139976... 29 2.6
04_04_1228 + 31888350-31892228,31892568-31893298,31893511-318935... 29 3.4
02_04_0431 - 22841708-22842571,22842659-22842743,22842796-228428... 29 4.5
11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793 28 6.0
07_01_1079 + 9770444-9772756 28 6.0
04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680 28 6.0
03_02_0022 - 5054548-5054663,5054899-5055103,5055194-5055261,505... 28 6.0
11_05_0070 + 18818127-18818404,18818492-18818532,18818691-188189... 28 7.9
>04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153
Length = 1112
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -2
Query: 678 KWWVXKKHQISSLKLLIRSRFLDCH*EKSFLLFHFY 571
KW KKH I LL+ S FL C SF++F Y
Sbjct: 441 KWKKQKKHWILGSSLLLGSFFLMCILLASFIIFQNY 476
>02_03_0020 -
13996688-13996785,13997168-13997217,13997516-13997619,
13997664-13997764,13998436-13998505,13998604-13999422,
14000894-14001052
Length = 466
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +3
Query: 483 NNYENFVDKLEKLTIESSLENEFSTNEMFNKNEIKENSSLNDNQEILIL 629
+NY +F K+ KLT ESS S + NK IKE ++ N I++L
Sbjct: 411 SNYPSFWQKVFKLTGESS----SSIHNGGNKKTIKEQCTITSNTYIMLL 455
>04_04_1228 +
31888350-31892228,31892568-31893298,31893511-31893586,
31894089-31894164,31894571-31894656,31895414-31895482,
31895579-31895588,31895711-31896207
Length = 1807
Score = 29.1 bits (62), Expect = 3.4
Identities = 24/76 (31%), Positives = 36/76 (47%)
Frame = +3
Query: 318 ITDLMHTQKILQAERELLTVTYSSENTWEIDFCPWENIIHSPKFIPVDSKNMIIDNNYEN 497
I DL+H A RE +++ YS+ + EI W +I H I D + N E+
Sbjct: 620 IHDLLHNLAAKVASRECVSLHYSNVRSVEI----WPSIRHLS--INTDGVDDSDGMNNES 673
Query: 498 FVDKLEKLTIESSLEN 545
F + L+KL +EN
Sbjct: 674 FRNILQKLKTRVKVEN 689
>02_04_0431 -
22841708-22842571,22842659-22842743,22842796-22842869,
22842953-22843002,22843086-22843167,22843941-22843987,
22844089-22844131,22844219-22844299,22844413-22844458,
22844557-22844603,22844709-22844774,22845030-22845096,
22845194-22845279
Length = 545
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 252 LTKDLIISLASYVYSGQLLPKHITDLMHTQKILQAERELLTVTYS-SENTWEIDFCPWEN 428
LTKD I LA + + L+ + ++ T + E L + Y + W + C +E
Sbjct: 137 LTKDNNIRLADFGLAKLLMEDLASTIVGTPNYMCPEI-LADIPYGYKSDIWSLGCCMFEI 195
Query: 429 IIHSPKFIPVDSKNMI 476
+ H P F D ++I
Sbjct: 196 LAHRPAFKAADMASLI 211
>11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793
Length = 783
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +3
Query: 306 LPKHITDLMHTQKILQAERELLTVTYSSENTWE 404
L + +D ++ Q+ ++++ E L VTYS ++ WE
Sbjct: 586 LSRRRSDYVNRQRFVRSKLEELLVTYSRQHPWE 618
>07_01_1079 + 9770444-9772756
Length = 770
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/65 (20%), Positives = 30/65 (46%)
Frame = +3
Query: 390 ENTWEIDFCPWENIIHSPKFIPVDSKNMIIDNNYENFVDKLEKLTIESSLENEFSTNEMF 569
E W + +++ SPK + + + + ++F+DK+ + +E E S+ F
Sbjct: 159 EKPWALSSASINSLVSSPKNVRRTTNREVKKDPIQDFIDKVNESRLEDGRWEESSSPADF 218
Query: 570 NKNEI 584
+E+
Sbjct: 219 KPSEL 223
>04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680
Length = 936
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Frame = +3
Query: 162 SQSLEEDTDLKTKYKTFLWFLNYGKIFVTRLTKDLIISL---ASYVYSGQLLPKHITDLM 332
+Q + ED ++ + +W + V RLTKD++ SL + + + L ++ D +
Sbjct: 261 AQQICEDGVVRKHFDCIIWICVSDEFEVNRLTKDVLKSLGVKSQHSDTRDTLMVNLRDSV 320
Query: 333 HTQKILQAERELLTVTYSSENTWEI 407
+ +K L ++ E W I
Sbjct: 321 NAKKFLLVLDDMWDDVLKDERGWRI 345
>03_02_0022 -
5054548-5054663,5054899-5055103,5055194-5055261,
5055573-5055861,5056687-5056753,5057928-5057974
Length = 263
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 213 LWFLNYGKIFVTRLTKDLIISLASYVYSGQLLPKH 317
LWF+ + I + L DLI S+ Y+ S L+PK+
Sbjct: 53 LWFIVHLAISLCSLWFDLIYSIECYLISFGLIPKY 87
>11_05_0070 +
18818127-18818404,18818492-18818532,18818691-18818990,
18820005-18820757,18820840-18820889
Length = 473
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +3
Query: 357 ERELLTVTYSSE---NTWEIDFCPWENIIHSPKF 449
E +L+ YSS+ +TW I F P+ N I P F
Sbjct: 376 ENQLINPFYSSQALASTWAIQFLPYGNQIEWPPF 409
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,530,674
Number of Sequences: 37544
Number of extensions: 255170
Number of successful extensions: 591
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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