Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k16
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g36180.1 68414.m04497 acetyl-CoA carboxylase 2 (ACC2) nearly ...    32   0.40 
At1g61190.1 68414.m06895 disease resistance protein (CC-NBS-LRR ...    31   0.70 
At1g36160.1 68414.m04495 acetyl-CoA carboxylase 1 (ACC1) nearly ...    31   0.70 
At3g07525.2 68416.m00898 autophagocytosis-associated family prot...    29   2.8  
At3g07525.1 68416.m00897 autophagocytosis-associated family prot...    29   2.8  
At5g62970.1 68418.m07901 F-box family protein contains F-box dom...    28   4.9  
At1g66300.1 68414.m07529 F-box family protein contains F-box dom...    28   4.9  
At1g63300.1 68414.m07156 expressed protein similar to Intracellu...    28   6.5  
At5g50500.1 68418.m06255 hypothetical protein                          27   8.6  
At4g00910.1 68417.m00124 expressed protein contains Pfam profile...    27   8.6  
At2g03780.1 68415.m00338 translin family protein similar to SP|Q...    27   8.6  

>At1g36180.1 68414.m04497 acetyl-CoA carboxylase 2 (ACC2) nearly
           identical to acetyl-CoA carboxylase 2 (ACC2)
           [Arabidopsis thaliana] GI:11869928
          Length = 1755

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +3

Query: 216 WFLNY--GKIFVTRLTKDLIIS-LASYVYSGQLLPKHITDLMHTQKILQAERELLTV 377
           W+L+   G ++    T   ++S    Y+  GQ+ PKHI+ L+H+Q  L  E    T+
Sbjct: 55  WYLSVVGGALYKASTTSSAVVSDYVGYLEKGQIPPKHIS-LVHSQVSLNIEGSKYTI 110


>At1g61190.1 68414.m06895 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 967

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = -2

Query: 435 GLYFPKDKNQSP-MYFHCYM*LLIIHVQLVI 346
           G+ F   KNQ+P  +F+C++ LL++H+  +I
Sbjct: 892 GMGFLNVKNQNPRFFFYCFIYLLVVHLDCII 922


>At1g36160.1 68414.m04495 acetyl-CoA carboxylase 1 (ACC1) nearly
           identical to acetyl-CoA carboxylase 1 (ACC1)
           [Arabidopsis thaliana] GI:11869927
          Length = 2247

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +3

Query: 216 WFLNY--GKIFVTRLTKDLIIS-LASYVYSGQLLPKHITDLMHTQKILQAERELLTV 377
           W+L+   G ++    T   ++S    Y+  GQ+ PKHI+ L+H+Q  L  E    T+
Sbjct: 553 WYLSVVGGALYKASATSAAVVSDYVGYLEKGQIPPKHIS-LVHSQVSLNIEGSKYTI 608


>At3g07525.2 68416.m00898 autophagocytosis-associated family protein
           contains autophagocytosis associated protein C-terminal
           domain, Pfam:PF03987
          Length = 226

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 447 FIPVDSKNMIIDNNYENFVDKLEKLTIESSLENEFSTNEMFN 572
           ++P+ ++ +++    E     LEK+ I SSLE E   +E  N
Sbjct: 40  WVPLINRTLLVSKKQEEGYLSLEKIIILSSLEEEIPEDESLN 81


>At3g07525.1 68416.m00897 autophagocytosis-associated family protein
           contains autophagocytosis associated protein C-terminal
           domain, Pfam:PF03987
          Length = 225

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +3

Query: 447 FIPVDSKNMIIDNNYENFVDKLEKLTIESSLENEFSTNEMFN 572
           ++P+ ++ +++    E ++  LEK+ I SSLE E   +E  N
Sbjct: 40  WVPLINRTLLVSKKEEGYLS-LEKIIILSSLEEEIPEDESLN 80


>At5g62970.1 68418.m07901 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 449

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/78 (25%), Positives = 40/78 (51%)
 Frame = +3

Query: 87  VSNNMNDSQKFIDKDISLRNSYLLESQSLEEDTDLKTKYKTFLWFLNYGKIFVTRLTKDL 266
           VS + +  + FI+K++ L +S ++ES  L+  T++       LW     +I V+R  ++L
Sbjct: 77  VSESGHRMRSFIEKNLPLHSSPVIESLRLKFFTEVFQPEDIKLWV----EIAVSRCAQEL 132

Query: 267 IISLASYVYSGQLLPKHI 320
            +          LLP+++
Sbjct: 133 SVDFFPKEKHNALLPRNL 150


>At1g66300.1 68414.m07529 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 456

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
 Frame = +3

Query: 117 FIDKDISLRNSYLLESQSLEEDTDLKTKYKTFLWFLNYGKIFVTRLTKDLI-ISLASYVY 293
           F++   +L++  +  ++   E T + + ++  L  L Y +I  T LT ++  + L SY+ 
Sbjct: 358 FLESCPNLKSLVVGSNRYRMERTSIISGHRCLLSSLEYVEI-ETPLTGEVFEMKLVSYLL 416

Query: 294 SGQLLPKHITDLMHTQKILQAERELLTVTYSSEN 395
               + K +T  +H     +AE E+LT+   S +
Sbjct: 417 ENSPILKKLTIHLHDNSRKKAECEILTIPRRSSS 450


>At1g63300.1 68414.m07156 expressed protein similar to Intracellular
           protein transport protein USO1 (Swiss-Prot:P25386)
           [Saccharomyces cerevisiae]; similar to Myosin II heavy
           chain, non muscle (Swiss-Prot:P08799) [Dictyostelium
           discoideum]
          Length = 1029

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 525 IESSLEN-EFSTNEMFNKNEIKENSSLNDNQEILILSE 635
           +E  LEN +  +NE+ N+   +E+ + N NQEI IL E
Sbjct: 698 MERMLENLDEKSNEIDNQKRHEEDVTANLNQEIKILKE 735


>At5g50500.1 68418.m06255 hypothetical protein 
          Length = 135

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +3

Query: 87  VSNNMNDSQKFIDKDISLRNSYLLES--QSLEEDTDLKTKYKTFLWFLNYGKIFVTR-LT 257
           + N     +K        R+S LL S   SL + +    K K +LWFLN+ KI + R L 
Sbjct: 45  IKNKFQHPRKASCMSCLFRSSTLLTSFMDSLSKTSRSDLKGKRYLWFLNF-KIDIYRTLC 103

Query: 258 KDLIISLASYVY 293
           K+ +     YV+
Sbjct: 104 KNHLSLSTIYVF 115


>At4g00910.1 68417.m00124 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 497

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 474 IIDNNYENFVDKLEKLTIESSLENEFSTNEMFNKN 578
           +I+ N E   D L+    E   ENE STN   ++N
Sbjct: 236 LIERNLEKLADSLDGCVAEYFKENEVSTNRNEDEN 270


>At2g03780.1 68415.m00338 translin family protein similar to
           SP|Q99598 Translin-associated protein X
           (Translin-associated factor X) {Homo sapiens}; contains
           Pfam profile PF01997: Translin family
          Length = 287

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = +3

Query: 429 IIHSPKFIPVDSKNMIIDNNYENFVDKLEKLTIESSLENEFST--NEMFNKNEIKE 590
           ++ +PK  P    + I ++  E+ V K   ++ ESS+++ FST  + + N NE +E
Sbjct: 15  MLMAPKLKP-QRLHQIAESGVEHLVKKARTMSTESSMKDAFSTYADYLNNFNEKRE 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,846,895
Number of Sequences: 28952
Number of extensions: 242377
Number of successful extensions: 616
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)