Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k15
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_42381| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.39 
SB_8975| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_20539| Best HMM Match : VWA (HMM E-Value=5.1848e-44)                29   4.8  
SB_29953| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_40409| Best HMM Match : HSBP1 (HMM E-Value=5.3)                     28   6.3  
SB_32481| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_45712| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -3

Query: 613 LSLRPKILSASELKHERSSENEGILHE-QTHSRPGVFGGTSINIVRKEYPAGSNEGRKTN 437
           +  R K+   ++   E   ++ G  H  + H++P   GGT  NI  +  P G +   ++N
Sbjct: 555 VDFRNKLEGDTKRNQESQKKHRGGTHSSEAHNKPK--GGTQHNIESQNNPKGGSHRSESN 612

Query: 436 NESKEEPK 413
           +++K  PK
Sbjct: 613 SKTKRGPK 620


>SB_42381| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 477 KSIQQAAMRDAKPTTNPRKSQSLAPRGPMQPPVYVSPRTCAFD 349
           K  ++A   + K  T+PRKS+SL    P +      P +C+FD
Sbjct: 22  KREEEAKKSEQKAKTSPRKSKSLREPRPRRDETRNQPESCSFD 64


>SB_8975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1002

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 592 LSASELKHERSSENEGILHEQTHSRPGVF 506
           +S   +KHE   E EG L E + SRPG+F
Sbjct: 76  ISHGAIKHELKEELEGELLETSLSRPGIF 104


>SB_20539| Best HMM Match : VWA (HMM E-Value=5.1848e-44)
          Length = 262

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 22/66 (33%), Positives = 30/66 (45%)
 Frame = -1

Query: 465 QAAMRDAKPTTNPRKSQSLAPRGPMQPPVYVSPRTCAFDTELTIIIDRVAITPHT*AALG 286
           QA +   + T+ PR  Q+  P  P  PP+   PRT A  T+    + R    P T A   
Sbjct: 193 QATIPPPRFTSRPRLPQTQRP--PTLPPLTFPPRTFAPLTQPPRPVTRRRDVPPTPAPTR 250

Query: 285 RSPGYT 268
           R P +T
Sbjct: 251 RPPVFT 256


>SB_29953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +2

Query: 422 FLGFVVGFASLIAACWILFANYVNASSSKHAWPGVGLFMQNAFIFAGSLVFK 577
           F GF   +  L+A  WI   N  + + + H+  G      N F F G L F+
Sbjct: 18  FSGFTHAYMGLVARFWIEKQNSKDIAKTSHSETGYADIGNNGFAFRG-LAFR 68


>SB_40409| Best HMM Match : HSBP1 (HMM E-Value=5.3)
          Length = 319

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
 Frame = +2

Query: 206 ASILAGLLFFAGWWFIIDAASVYPGDLPNA--AHVCGVMATLSMIMVNSVSNAQVRG--E 373
           A +L  +L  A WWF +D    YP  L  A  A  C V      +  +      + G  E
Sbjct: 141 ALLLIIVLRDAFWWFFLDKFQYYPDCLAQALYASYCDVFPRSYNLFDDDFKTDLMNGVYE 200

Query: 374 TYTGGCMGPRGARLWLF 424
             TG    PR  + W F
Sbjct: 201 WITGTRPPPRSWQKWHF 217


>SB_32481| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +2

Query: 305 CGVMATLSMIMVNSVSNA-QVRGETYTG--GCMGPRGARLWLFLGFVVGFASLIAACWIL 475
           CG +A L+ +    +  A Q  G  Y       GP  A L+ + G ++   ++ A   ++
Sbjct: 84  CGFLALLACLCYTELGTAVQKSGAEYAYLMEAFGPIPAFLFAWTGIIINRPAITAIVSLI 143

Query: 476 FANYV 490
           FA YV
Sbjct: 144 FAEYV 148


>SB_45712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -1

Query: 390 QPPVYVSPRTCAFDTELTIIID 325
           +PP+ + PRTCA  TEL ++ID
Sbjct: 19  RPPLLLFPRTCA--TELALLID 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,365,059
Number of Sequences: 59808
Number of extensions: 501661
Number of successful extensions: 1278
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)