Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k15
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g36980.1 68414.m04610 expressed protein                             63   1e-10
At1g09940.1 68414.m01120 glutamyl-tRNA reductase 2 / GluTR (HEMA...    33   0.24 
At3g50230.1 68416.m05493 leucine-rich repeat transmembrane prote...    29   3.0  
At3g23270.1 68416.m02933 regulator of chromosome condensation (R...    28   6.8  
At2g42960.1 68415.m05328 protein kinase family protein contains ...    28   6.8  
At4g37530.1 68417.m05310 peroxidase, putative similar to peroxid...    27   9.0  

>At1g36980.1 68414.m04610 expressed protein
          Length = 135

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 36/125 (28%), Positives = 57/125 (45%)
 Frame = +2

Query: 218 AGLLFFAGWWFIIDAASVYPGDLPNAAHVCGVMATLSMIMVNSVSNAQVRGETYTGGCMG 397
           +G +F  GWWF +DA       +P   ++ G+ A+L  +M N V    +    Y     G
Sbjct: 15  SGAVFGTGWWFWVDAVVCSSIQVPFVHYLPGIFASLGALMFNCVRKEDIDYSPYD---EG 71

Query: 398 PRGARLWLFLGFVVGFASLIAACWILFANYVNASSSKHAWPGVGLFMQNAFIFAGSLVFK 577
               +LWLF+ +VV F SL A+  +L  + V   +    W GV    Q  F+    L++ 
Sbjct: 72  EWRLKLWLFIAYVVAFVSLAASVGLLIQDSV-VKTGPSTWTGVAGVFQCVFVLISGLMYW 130

Query: 578 FGRTE 592
              +E
Sbjct: 131 TSHSE 135


>At1g09940.1 68414.m01120 glutamyl-tRNA reductase 2 / GluTR (HEMA2)
           identical to glutamyl-tRNA reductase 2, chloroplast
           [SP|P49294]
          Length = 530

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -1

Query: 255 IINHH-PAKNSSPANIDAIMFRFSPLSNQTQLGML 154
           + NHH P  +SSPA +D I  R  P++N+ + G++
Sbjct: 17  LANHHNPTYSSSPAPLDVIGIRALPMNNRNKRGLI 51


>At3g50230.1 68416.m05493 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase (RKL1),
           Arabidopsis thaliana, EMBL:AF084034
          Length = 660

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +2

Query: 416 WLFLGFVVGFASLI--AACWILFANYV 490
           WL LGF +G ASLI    C ++F+ ++
Sbjct: 291 WLVLGFTIGLASLIVLGLCLVVFSLFI 317


>At3g23270.1 68416.m02933 regulator of chromosome condensation
           (RCC1) family protein contains Pfam domain PF00415:
           Regulator of chromosome condensation (RCC1); similar to
           zinc finger protein (GI:15811367) [Arabidopsis
           thaliana]; similar to chromosome condensation regulator
           protein (GI:22770461) [Cicer arietinum]
          Length = 1045

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 522 PGQACLEELALT*FAKSIQQAAMRDAKPTTNPRKSQSLAPRGPMQPP 382
           P    L+++A      +IQ A      PTT P ++  + P  P  PP
Sbjct: 728 PSLQQLKDIAFPSSLSAIQNAFKPVVAPTTTPPRTLVIGPSSPSPPP 774


>At2g42960.1 68415.m05328 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 494

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +2

Query: 395 GPRGARLWLFLGFVVGFASLIAAC----WILFANYVNASSSK 508
           G +G +LW+++  VVG   ++  C    WI F      SSSK
Sbjct: 19  GLKGLKLWVWVCLVVGVFIVMILCILSLWITFRRKSRRSSSK 60


>At4g37530.1 68417.m05310 peroxidase, putative similar to peroxidase
           [Arabidopsis thaliana] gi|1402906|emb|CAA66958;
           identical to Pfam profile PF00141: Peroxidase; identical
           to cDNA peroxidase ATP37 GI:18874553
          Length = 329

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 311 VMATLSMIMVNSVSNAQVRGETYTGGC 391
           ++  LS+ +  ++S+AQ+RG+ Y G C
Sbjct: 10  LLLILSLFLAINLSSAQLRGDFYAGTC 36


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,655,943
Number of Sequences: 28952
Number of extensions: 340928
Number of successful extensions: 911
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)