Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k14
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17442| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_47305| Best HMM Match : I-set (HMM E-Value=0)                       30   1.8  
SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)                   28   5.5  
SB_11465| Best HMM Match : EGF (HMM E-Value=0.13)                      28   5.5  

>SB_17442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 628 WQVDNGLKYYHIKKIVLQKMKYVKITF 548
           W +DNGLK Y   K+V+      ++TF
Sbjct: 204 WHIDNGLKVYRNGKLVVTDKSAAEVTF 230


>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
          Length = 5832

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 290  KDVEAAPEIPEHYS-SKLNVPENPEI 364
            KD + APEIP H    +LNVPE  EI
Sbjct: 3580 KDKQYAPEIPGHEDRQELNVPEGQEI 3605


>SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)
          Length = 686

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
 Frame = +2

Query: 194 PVYIRSGDTPLEEINPDLAEAFNALPAGRS----AGKDVEAAPEIPEHYSSKLNVPENPE 361
           P   R   T   E  PD     +  P   +    A +   AA   PEH ++  N P++  
Sbjct: 408 PTTSRPSHTSATEYYPDRQAPGHRTPDRHTHNNHAPESYPAAQHTPEHLTNTRNTPDHTH 467

Query: 362 IGDS 373
           +GDS
Sbjct: 468 VGDS 471


>SB_11465| Best HMM Match : EGF (HMM E-Value=0.13)
          Length = 695

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 628 WQVDNGLKYYHIKKIVLQKMKYVKITF 548
           W V+NGLK YH  K+V  +     + F
Sbjct: 67  WHVNNGLKLYHNAKLVATEENSTDVKF 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,024,398
Number of Sequences: 59808
Number of extensions: 355016
Number of successful extensions: 931
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)