Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k14
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     25   0.47 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.3  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   5.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.7  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -2

Query: 455 INLKNSII-YVKNLSYLSPLREISIFKSGYHQFLGFRAH*VLMSSVREFL 309
           +NL++S+  Y+ +L  +     I +    YH ++G  +  +++   REF+
Sbjct: 98  LNLRDSVTKYLIHLKEIEDTEPILLIAYIYHLYMGLLSGGIILRKKREFM 147


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 534 WFSDAHNNHRVNKQKG 487
           W S  H+NHRV  + G
Sbjct: 348 WVSGNHDNHRVASRFG 363


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 194 ARNPVLAVGTAISGVPQQ 141
           A  PV A+GT  +  PQQ
Sbjct: 162 AYEPVWAIGTGKTATPQQ 179


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/39 (20%), Positives = 18/39 (46%)
 Frame = +2

Query: 227 EEINPDLAEAFNALPAGRSAGKDVEAAPEIPEHYSSKLN 343
           +E++  +       PAG    +DV     + ++Y + +N
Sbjct: 72  QEVHAQVYSCLARSPAGSVHSRDVNVRAVVAQYYDTDVN 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,306
Number of Sequences: 438
Number of extensions: 3496
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)