Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k14
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73720.1 68414.m08536 transducin family protein / WD-40 repea...    29   3.4  
At5g48575.1 68418.m06008 hypothetical protein                          27   7.9  
At1g23400.1 68414.m02930 expressed protein                             27   7.9  

>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           similar to Will die slowly protein
           (SP:Q9V3J8)[Drosophila melanogaster]
          Length = 511

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
 Frame = +3

Query: 141 LLRHARNGSSYRKHRVTCPFTSGAETRPSKKSILIWLKLSTLC-------PPEEALVKMS 299
           LL+  R  +SY  H +     S   T  S  ++ +W   +T C       PP        
Sbjct: 339 LLKEFRGHTSYVNHAIFTSDGSRIITASSDCTVKVWDSKTTDCLQTFKPPPPLRGTDASV 398

Query: 300 KQPQKFPNTTHQNLMCPKTQKLVIAALK 383
                FP  T   ++C KT  + I  L+
Sbjct: 399 NSIHLFPKNTEHIVVCNKTSSIYIMTLQ 426


>At5g48575.1 68418.m06008 hypothetical protein
          Length = 268

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/75 (24%), Positives = 36/75 (48%)
 Frame = +3

Query: 162 GSSYRKHRVTCPFTSGAETRPSKKSILIWLKLSTLCPPEEALVKMSKQPQKFPNTTHQNL 341
           GS+ +K+ +T    +  E   SK+ ++  + L   CPP+E      ++ +       +N 
Sbjct: 121 GSATQKNAITL---TQVEAETSKEVMIFIINLEKKCPPKEEYEVFFEKLKGIMAARSKN- 176

Query: 342 MCPKTQKLVIAALKY 386
             PK++K   + +KY
Sbjct: 177 -SPKSKKSFFSTIKY 190


>At1g23400.1 68414.m02930 expressed protein
          Length = 564

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 167 FLPQAPGYVPVYIRSGDTPLEEINPD--LAEAFNALPAGRSAGKDVEAAPEIP 319
           F+P AP  +P    +G  PL++      L ++FN  PAG+S  K VE    +P
Sbjct: 133 FMPFAPPTMP-RPWTGKAPLKKSKKKIPLFDSFNPPPAGKSGVKYVEMPGPLP 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,562,625
Number of Sequences: 28952
Number of extensions: 244360
Number of successful extensions: 558
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)