Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10k13
(643 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47814| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.021
SB_42086| Best HMM Match : 7tm_1 (HMM E-Value=0.0017) 31 0.80
SB_36243| Best HMM Match : 7tm_2 (HMM E-Value=2.2e-09) 31 0.80
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15) 31 1.1
SB_6283| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 29 3.2
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_5475| Best HMM Match : Endonuclease_7 (HMM E-Value=0.084) 28 7.4
>SB_47814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1492
Score = 36.3 bits (80), Expect = 0.021
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +1
Query: 217 IKSERINALRKQYDAFLEEDKKRRERNEFILDRLDKIRYCTATV 348
+KS+ +N Q +A E+DK+R++RN +I+ LD T +
Sbjct: 799 VKSDNVNLTEIQAEALCEDDKQRKKRNYYIVAELDAFNMNTTII 842
>SB_42086| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)
Length = 250
Score = 31.1 bits (67), Expect = 0.80
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = -3
Query: 263 KASYCFLSALIRSDFIIVIPSRVKIFKFANFPYESISL 150
++ Y SALI S I++ S+VKIFK A + ISL
Sbjct: 176 RSFYYISSALIVSVIAIIVVSQVKIFKLARHHHVQISL 213
>SB_36243| Best HMM Match : 7tm_2 (HMM E-Value=2.2e-09)
Length = 1338
Score = 31.1 bits (67), Expect = 0.80
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +1
Query: 265 LEEDKKRRERNEFILDRLDKIRYCTATVPYRKSNV--SNLRSQIQFSRNQDIQARSTNEI 438
++ D +RR NE+ L R+D +R A + R + S+L + +F R + A S
Sbjct: 344 IQSDNERRIENEYELKRMDSVRLTNAQLSGRSEEIDLSDLLREAKFIRKRRAIAAS---- 399
Query: 439 LAYLNSFSGIDDTT 480
A LNS +DT+
Sbjct: 400 -AQLNSEISGNDTS 412
>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
Length = 1774
Score = 30.7 bits (66), Expect = 1.1
Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 4/145 (2%)
Frame = +1
Query: 220 KSERINALRKQYDAFLEEDKKRRERNEFILDRLDK-IRYCTATVPYRKSNVSNLRSQIQF 396
K E + +R++YD+ L ++K + E EF++ +K A + +VS L+ +++
Sbjct: 1128 KIEELEGMREEYDSLLMDEKAKAEALEFMITASNKENEKLRALDEGLEKDVSRLQGELK- 1186
Query: 397 SRNQDIQARSTNEILAYLNSFSGIDDTTIQEICKKFVLIPKVPSSVPK-MNFIENRYKDS 573
R + R N + L D ++++ + + + SS+ ++ I+ R +S
Sbjct: 1187 -RTTSFKDRELNNLKRDLEK----KDNRLEQLTMESEEMHRSASSLKAIVDKIKERLAES 1241
Query: 574 EPNDNVDWKRKY--EILNQLKNIEK 642
E D VD Y ++ ++K ++K
Sbjct: 1242 E--DRVDACSSYIEDLEKEIKRLQK 1264
>SB_6283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 29.9 bits (64), Expect = 1.8
Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 3/141 (2%)
Frame = +1
Query: 184 LNIFTLEGITIIKSERINALRKQYDAFLEEDKKRRERNEFILDRLDKI--RYCTATVPYR 357
+ +LE I KSE L + D + E+ K + + + + R
Sbjct: 110 IEAISLEHNRIKKSESSGCLESKSDPLIVENNKEDSHTVQVNTKNANAANKKLAKNITKR 169
Query: 358 KSNVSNLRSQIQFSRNQDIQARSTNEILAYLNSFSGIDDTTIQEICKKFVLIP-KVPSSV 534
K + + +S+ +R + I+ T S D T+Q++ K + KVP++
Sbjct: 170 KKDRTKKQSKSGKTRKKSIKKTKT----------SVFDRLTLQDVPTKSIATQQKVPTNP 219
Query: 535 PKMNFIENRYKDSEPNDNVDW 597
P+ N IEN P + W
Sbjct: 220 PRKNIIENSPSVPSPRKELGW 240
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +2
Query: 305 YWTDWIKYDIALLQFPIASRTFPIFAHKFNFQETKIFRQDQQ 430
YWTDW+ DI S + + F K+F +Q
Sbjct: 730 YWTDWVTLDIRRASVASPSDVTALRSQLFGLMMIKVFNSSRQ 771
>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1351
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +1
Query: 211 TIIKSERINALRKQYDAFLEEDKKRRERNEFILDRLDKIRYCTATVPYRKSNVSNLRSQI 390
T+++ I A+ Y A L E+K + R K+ +C PY + V L
Sbjct: 1045 TLLRKADIKAILHDYGAELSEEKMKGYMKALKTKRFSKLEFCLRH-PYTIALVERLEEVE 1103
Query: 391 QFSR-NQDIQARSTNE 435
+ R D + R T+E
Sbjct: 1104 RDGRQGPDSRRRQTHE 1119
>SB_5475| Best HMM Match : Endonuclease_7 (HMM E-Value=0.084)
Length = 682
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +3
Query: 354 SQVERFQSSLTNSIFKKPRYSGKINKRNTSVFKFF*W 464
S ERF+ ++T+++F + R++ ++NK+ + F W
Sbjct: 248 SDHERFKWAVTSAVFPRERHAQRLNKQMRESSEEFNW 284
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,785,470
Number of Sequences: 59808
Number of extensions: 322864
Number of successful extensions: 974
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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