Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k13
         (643 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59760.1 68418.m07490 hypothetical protein                          30   1.1  
At3g54826.1 68416.m06072 zinc finger (DNL type) protein-related ...    29   2.0  
At2g45920.1 68415.m05710 U-box domain-containing protein contain...    29   2.0  
At4g39010.1 68417.m05526 glycosyl hydrolase family 9 protein end...    28   4.6  
At1g55930.1 68414.m06415 CBS domain-containing protein / transpo...    28   6.1  
At5g16730.1 68418.m01959 expressed protein weak similarity to mi...    27   8.0  

>At5g59760.1 68418.m07490 hypothetical protein
          Length = 221

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/88 (22%), Positives = 42/88 (47%)
 Frame = +1

Query: 190 IFTLEGITIIKSERINALRKQYDAFLEEDKKRRERNEFILDRLDKIRYCTATVPYRKSNV 369
           +F LE + +  +E+    R++ +  L   K  ++  +    +L +  + T   P    N 
Sbjct: 15  LFELETLKMEANEKSRTHREEVNQLLNLLKFTQQERDEARQQLSQFIFHTQQNP----NS 70

Query: 370 SNLRSQIQFSRNQDIQARSTNEILAYLN 453
            +L     FS +QD+ + S++E+  +LN
Sbjct: 71  RSLTKSNSFSHSQDVSSSSSSELSTFLN 98


>At3g54826.1 68416.m06072 zinc finger (DNL type) protein-related
           contains weak hit to PF05180: DNL zinc finger
          Length = 193

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 351 LSQVERFQSSLTNSIFKKPRYSGKINKRNTSVFK 452
           LSQV   Q SL+NS+F +    G++ +R  SV +
Sbjct: 24  LSQVSTEQLSLSNSLFSRSHVYGRLFQRQLSVIR 57


>At2g45920.1 68415.m05710 U-box domain-containing protein contains
           Pfam profile PF04564: U-box domain
          Length = 400

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
 Frame = +1

Query: 172 KFANLNIFTLEGITIIKSERINALRKQYDAFLEEDKKRRERN---EFILDRLDKIRY 333
           K A+L  F  + +   K+E I   ++   A+LEE K+R+E     + + ++L+K+RY
Sbjct: 205 KEASLEAFKHQEVVKEKNEAIKRGKEWESAYLEELKQRKETEMELKKVREKLEKMRY 261


>At4g39010.1 68417.m05526 glycosyl hydrolase family 9 protein
           endo-1,4-beta-glucanase precursor - Fragariax ananassa,
           PID:g3549291
          Length = 497

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = +1

Query: 394 FSRNQDIQARSTNEILAYLNSFSGIDDTTIQEICKKFVLIPKVPSSVPKMNFIENRYKDS 573
           +S N DI+    N++  +   F+G  D    E+      + K       +N+IE+  +  
Sbjct: 220 YSSNDDIK----NDVCPFYCDFNGFQD----ELLWGAAWLRKATGDESYLNYIESNREPF 271

Query: 574 EPNDNVD---WKRKYEILNQLKNIE 639
             NDNVD   W  K   LN L + E
Sbjct: 272 GANDNVDEFGWDNKVGGLNVLVSKE 296


>At1g55930.1 68414.m06415 CBS domain-containing protein /
           transporter associated domain-containing protein
           contains Pfam profiles PF00571: CBS domain, PF03471:
           Transporter associated domain, PF01595: Domain of
           unknown function
          Length = 653

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +1

Query: 490 ICKKFVLIPKVPSSV----PKMNFIENRYKDSEPNDNVDWKRKYEI 615
           +C+ F  IPK   SV     K N+ EN  +D   ++  D K K++I
Sbjct: 533 VCEAFGYIPKTGESVTVVLEKENWEENDEQDEGKHERQDQKEKHQI 578


>At5g16730.1 68418.m01959 expressed protein weak similarity to
           microtubule binding protein D-CLIP-190 [Drosophila
           melanogaster] GI:2773363, SMC2-like condensin
           [Arabidopsis thaliana] GI:14279543
          Length = 853

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 520 VPSSVPKMNFIENRYKDSEPNDNVDWKRKYEILNQLKNIEK 642
           V S   +MN ++N  K +E   +  WK++ +  + LK +E+
Sbjct: 563 VASMGKEMNRLDNLLKRTEEEADAAWKKEAQTKDSLKEVEE 603


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,088,624
Number of Sequences: 28952
Number of extensions: 231607
Number of successful extensions: 778
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)