Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k12
         (652 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0DB18 Cluster: Chromosome undetermined scaffold_44, wh...    33   5.9  
UniRef50_P73736 Cluster: N-acetylmuramoyl-L-alanine amidase; n=1...    33   7.8  

>UniRef50_A0DB18 Cluster: Chromosome undetermined scaffold_44, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_44,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 580

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -2

Query: 348 YFGVYLFNDDIIRLLTASLVTLNFLPGNFPKQGS 247
           YFG Y+ N++I + + A ++ LN L   FP+ G+
Sbjct: 13  YFGFYVANNEIFKTILAQVLDLNQLQQQFPQYGT 46


>UniRef50_P73736 Cluster: N-acetylmuramoyl-L-alanine amidase; n=1;
           Synechocystis sp. PCC 6803|Rep:
           N-acetylmuramoyl-L-alanine amidase - Synechocystis sp.
           (strain PCC 6803)
          Length = 649

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 19/44 (43%), Positives = 27/44 (61%)
 Frame = -2

Query: 342 GVYLFNDDIIRLLTASLVTLNFLPGNFPKQGSSSDRITF*IQPP 211
           G  L+  ++I   TAS  T N LP N P +G+S D+I+  +QPP
Sbjct: 404 GGSLYALELISDTTASRPTGN-LPANNPPRGNSGDQISIAVQPP 446


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 627,087,301
Number of Sequences: 1657284
Number of extensions: 11646585
Number of successful extensions: 20564
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20563
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)