Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k12
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   7.2  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   7.2  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    25   7.2  

>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 409 DEKLLENRYAAFKRAIMRFHTNPSL*TNLRPKN 507
           D  +LEN    F+RA  RF ++ +   NL  +N
Sbjct: 126 DRLILENHQQEFERAARRFRSSIAALRNLNTQN 158


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 494 CDQKTISKYHRATNFLARYD*LQQHFFFFSKLKLPL 601
           CD++ +S    A + L R+  LQ   +    LK+PL
Sbjct: 176 CDRRLLSSLVEALSSLVRHSKLQGCLYTIFNLKIPL 211


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
            Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 176  NINQISITKRFSKWLPYFNR 117
            N NQ+S TK+  K LP +NR
Sbjct: 1132 NANQVSKTKKNLKVLPLYNR 1151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,917
Number of Sequences: 5004
Number of extensions: 54612
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)