Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10k07
(725 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44437| Best HMM Match : PBP (HMM E-Value=2.5e-05) 56 2e-08
SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21) 44 1e-04
SB_52449| Best HMM Match : PBP (HMM E-Value=1.1e-05) 44 1e-04
SB_16428| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45) 30 1.7
SB_24353| Best HMM Match : CUB (HMM E-Value=0.18) 30 2.2
SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76) 29 2.9
SB_55864| Best HMM Match : Sad1_UNC (HMM E-Value=6.9e-25) 29 2.9
SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_47579| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_47305| Best HMM Match : I-set (HMM E-Value=0) 29 3.8
SB_26695| Best HMM Match : Peptidase_M14 (HMM E-Value=0) 28 6.7
SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35) 28 6.7
SB_55983| Best HMM Match : RhoGEF (HMM E-Value=0.0046) 28 8.9
SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32) 28 8.9
SB_19438| Best HMM Match : DEAD (HMM E-Value=7.5e-07) 28 8.9
SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_44437| Best HMM Match : PBP (HMM E-Value=2.5e-05)
Length = 314
Score = 56.4 bits (130), Expect = 2e-08
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 1/164 (0%)
Frame = +2
Query: 206 APAALLQVKYPSGVEVKEGNELTPTQVKDEPSVKWDAEPGQYYTLAMTDPDAPSRKEPTF 385
+P L ++Y SG +V GN LTP+Q + G D+ S
Sbjct: 92 SPCVNLDIRYESGAKVHHGNFLTPSQ---------HSACGFGVDSLWILHDSEST----- 137
Query: 386 REWHHWLVGNIQGNEVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKL-TFDEPRLTN 562
++ H + NIQG+ V++G L +Y+ PP+ TG HRY F L +Q +L + P T
Sbjct: 138 -QFVHASLVNIQGSRVSNGTVLCEYLPPIPPQGTGFHRYTFCLLRQEQQLKPYTLP--TF 194
Query: 563 TSSDKRANFKIAEFAKKYNLGDPIAGNFYEAQYDDYVPILYKQL 694
S R+ A +K + P+ F++A +DD V ++ +
Sbjct: 195 RSLTDRSISTSALISKVQDRLTPVGLGFFQASWDDSVTQTFRDI 238
>SB_8527| Best HMM Match : zf-C2H2 (HMM E-Value=4.3e-21)
Length = 1049
Score = 44.4 bits (100), Expect = 1e-04
Identities = 21/54 (38%), Positives = 35/54 (64%)
Frame = -2
Query: 538 CELRWLFVQEEHVSVQACLFRRSRAHVLGQSFAGVYLVALDVANQPVVPFAKCG 377
C L L V +++V+++A R +RA+VL S Y+ A D+ ++PVVPF++ G
Sbjct: 332 CNLPLLLVHKKNVTMEASSLRWTRANVLSGSHPLAYITARDIDHKPVVPFSEFG 385
>SB_52449| Best HMM Match : PBP (HMM E-Value=1.1e-05)
Length = 115
Score = 44.0 bits (99), Expect = 1e-04
Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
Frame = +2
Query: 350 DPDAPSRKEPTFREWHHWLVGNIQGNE------VNSG---------ETLSQYVGSGPPEK 484
DPDAPS +R W H+L NI +E + SG L Y PP
Sbjct: 4 DPDAPSPIRHQYRSWLHYLKVNIPSDELAQRLDIQSGMDTIQSGMDTELKSYRPPSPPSG 63
Query: 485 TGLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNL 622
+GLHRY + +Q K+ P + +R +F EFA K+NL
Sbjct: 64 SGLHRYKYYALEQTGKV---RP----SPISERRSFDAQEFAAKHNL 102
>SB_16428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1005
Score = 33.5 bits (73), Expect = 0.18
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +2
Query: 446 TLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLG 625
T+ + S PE+ L + +Q S+L + S D+R K+ E + + +G
Sbjct: 726 TVDSSLTSSEPEERDLKAELAAWTRQTSQLPLPAEGIRTCSLDRRRGKKVFEMSSSHKIG 785
Query: 626 DPIAGNFYEAQYDDYVP 676
AG+F + DD P
Sbjct: 786 RYSAGDFPVQEVDDNKP 802
>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
Length = 649
Score = 30.3 bits (65), Expect = 1.7
Identities = 31/128 (24%), Positives = 52/128 (40%)
Frame = +3
Query: 312 TRSQDSTTLWP*PTLMRRPVKNPHFANGTTGWLATSRATR*TPAKLCPSTWALDLRKRQA 491
T+++ TT P+ P+ +P T AT+ T A + A Q
Sbjct: 380 TKAKPPTTT---PSKATAPISDPMTTTTPTTTKATTPTTTKATASTQTAAEANTFLSTQK 436
Query: 492 CTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRSTT*GIRLRATSTKRSMTTT 671
T S T+ ++ S + + T +T+ + SS STT +TST ++ TT
Sbjct: 437 TDATTSQSTSTTEATKSQTTKATTTLSTSTTKATTTSST-STTKATTTLSTSTTKATTTP 495
Query: 672 SLFCTSSS 695
S T ++
Sbjct: 496 STSTTKAT 503
>SB_24353| Best HMM Match : CUB (HMM E-Value=0.18)
Length = 564
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -3
Query: 156 TVDIALVKTLKLTIVATVNKTIAHLINAPIS 64
T++I + + +TI+ T+N T+A IN PI+
Sbjct: 103 TINIPVAIAITITIIKTINITVAIAINIPIA 133
>SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76)
Length = 600
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -1
Query: 512 RGTRICAGLSFPEVQSPRTGTKFRRSLPRCPGCCQPASGAIREMWVLYGTAHQGRS 345
+G + +S EV+SP + ++P PG P+SGA+ + LY H G +
Sbjct: 539 QGDHLAGLVSAGEVRSPGCSPEDVLAVPASPGLVPPSSGALTD---LYQRLHAGEN 591
>SB_55864| Best HMM Match : Sad1_UNC (HMM E-Value=6.9e-25)
Length = 526
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = -1
Query: 464 PRTGTKFRRSLPRCP-GCCQPASGAIREMWVLYGTAHQGRSWPECSTVLAPRPISLKARL 288
PR + RS +C CC+ R L T H+GR P T RP+ +K
Sbjct: 173 PRRSLRPNRSRSQCSLECCEEEDMETRSKARLM-TPHEGRRTPRTRTSARTRPLGIKKEP 231
Query: 287 SPELESAHYLL 255
+++ +L
Sbjct: 232 EDDVDHVKAML 242
>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1434
Score = 29.5 bits (63), Expect = 2.9
Identities = 26/100 (26%), Positives = 44/100 (44%)
Frame = +2
Query: 248 EVKEGNELTPTQVKDEPSVKWDAEPGQYYTLAMTDPDAPSRKEPTFREWHHWLVGNIQGN 427
E+ E + + + + + EP Q + + AP+ KEP RE G+ G+
Sbjct: 788 ELGESGKSGESSISKRSKIPRENEPVQQTEIKKSTQPAPASKEPK-REGASGESGSGSGS 846
Query: 428 EVNSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDE 547
V+S T GP +KT + ++ QP+K T +E
Sbjct: 847 SVSSSITKRSL---GPLDKTDSGKVA--MFAQPAKETANE 881
>SB_47579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 29.1 bits (62), Expect = 3.8
Identities = 26/98 (26%), Positives = 44/98 (44%)
Frame = -2
Query: 595 NFEIGTFVARSVSESRLVECELRWLFVQEEHVSVQACLFRRSRAHVLGQSFAGVYLVALD 416
N ++G + + E R +L W + + ++VQ C R+ HVL + V LD
Sbjct: 92 NGDLGALIKKHKREKRYTAEDLVWKLLYQLVLAVQECHRRKDGGHVLHRDLKPAN-VFLD 150
Query: 415 VANQPVVPFAKCGFFTGRRIRVGHGQSVVLSWLRVPFH 302
AN V K G F R+ + H S +++ P++
Sbjct: 151 -ANMNV----KLGDFGLARV-LSHDTSFAKTFVGTPYY 182
>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
Length = 5832
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 161 KSFEASQVVPDVIPKAPAALLQVKYPSGVEVKEGNELTPTQVKDEPSVKW 310
+SFE P V +AP+ L+++ + +E + + K +P +KW
Sbjct: 2919 RSFEVDVTAPKVKGEAPSFSLELRPIAAIEEFDSKLICHVSGKPKPQIKW 2968
>SB_26695| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
Length = 441
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 338 LAMTDPDAPSRKEPTFREWHHWLVGNIQGNEVNSGETLSQYVG 466
L + D P + E E+ + +GN+ GNEV S E L Q +G
Sbjct: 69 LVLEISDKPGKHEKGEPEFKY--IGNMHGNEVVSREILLQLIG 109
>SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35)
Length = 978
Score = 28.3 bits (60), Expect = 6.7
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Frame = +2
Query: 224 QVKYPSGVEVKEGNELTPTQVKDEPSVKWD------AEPGQY--YTLAMTDPDAPSRKEP 379
Q+K GV K L+ TQ+ SV+WD A+PG + + +TD + +
Sbjct: 123 QIKALPGVRAKP---LSSTQI----SVEWDSLQPLTADPGDLISHKIILTDKETGDVTQR 175
Query: 380 TFREWHHWL-VGNIQ 421
T W +WL V N+Q
Sbjct: 176 TTNSWTNWLVVSNLQ 190
>SB_55983| Best HMM Match : RhoGEF (HMM E-Value=0.0046)
Length = 357
Score = 27.9 bits (59), Expect = 8.9
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Frame = +3
Query: 450 CPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRD----SLTLRATNVPISKLPSSPRST 617
C S + + CT CT+ R H TSRD S LR T+ + R T
Sbjct: 276 CTSRYVCCTSRDVRCTSRDVRCTSRDRDGHFTSRDVRCNSRDLRCTSRDLRCTSRDVRCT 335
Query: 618 T*GIRLRATSTKRSMTTTSLFCTSS 692
+ +R T + TS+ C S
Sbjct: 336 SRDVR----CTLCDVRCTSVICAIS 356
>SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)
Length = 398
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 434 NSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRAN 586
NS T SQ V S PP + ++ L K PS+ +F R+ +++ ++ N
Sbjct: 294 NSRFTTSQAVQSPPPLPSSYREFMVQLQKLPSEGSFPPNRVAPSATMQQRN 344
>SB_19438| Best HMM Match : DEAD (HMM E-Value=7.5e-07)
Length = 391
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -2
Query: 694 ELLVQNRDVVVILRFVEVARNRI 626
ELLV ++DVV++L FV + + ++
Sbjct: 269 ELLVHHKDVVLVLPFVSIVQEKV 291
>SB_8632| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1296
Score = 27.9 bits (59), Expect = 8.9
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Frame = +3
Query: 375 NPHFANGTTGWLATSRATR*TPA-KLCPSTWALDLRKRQACT--DTCSSCTNNHRSSHST 545
N + T ++TS T T + L ST L K + T DT ++ T + H+T
Sbjct: 605 NTYTKTDTLTAISTSITTLVTTSIHLATSTQLLTSTKTETKTNTDTSTATTTTTHTHHTT 664
Query: 546 SRDSLTLRATNVPISKLPSSPRSTT*GIRLRATSTKRSMTTTSLFCTSS 692
T+R T V SS TT + AT T+ ++ T++ T +
Sbjct: 665 ETQVSTVRTTTVDTL---SSTHVTT--ATITATKTQTTLATSTTVTTET 708
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,347,402
Number of Sequences: 59808
Number of extensions: 579571
Number of successful extensions: 1879
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1870
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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