Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k07
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.9  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   6.8  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   6.8  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   6.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 516 TNNHRSSHSTSRDSLTLRATNVPISKLPSSPRS 614
           TN   + ++ +   +++  T VPI+ LP+S  S
Sbjct: 833 TNVTTTINTPTTSVISMSGTTVPITSLPASSTS 865


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 386 EMWVLYGTAHQGRSW 342
           E WV+Y    + RSW
Sbjct: 33  EKWVVYNNIKRKRSW 47


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 204 FGITSGTTWLASKDFATVDIALVKTLKLTIVA 109
           +GI++G    A +  A   +ALV TL + IV+
Sbjct: 384 YGISAGLNRTAGQQAAYQLLALVITLGIAIVS 415


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 386 EMWVLYGTAHQGRSW 342
           E WV+Y    + RSW
Sbjct: 154 EKWVVYNNIKRKRSW 168


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 228 TCNKAAGAFGITSGTTW 178
           + NKA+ AFGI S T +
Sbjct: 483 SANKASKAFGIPSSTLY 499


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = +3

Query: 435 TPAKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLT 563
           +PA+ C ST  +  R  Q         T+N+ ++   +   +T
Sbjct: 746 SPAEQCASTTTITARSPQGSQGLLQCATSNYSTTRWPATSVIT 788


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 343 GQSVVLSWLRVPFH*RLVFHLSWSQLITFFN 251
           G S+   WLR      +VF L    L+  FN
Sbjct: 583 GSSIKAMWLRRALASLMVFSLGLFLLLDMFN 613


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 293 EPSVKWDAEPGQYYTLAMTDPDAPSRKEPTF 385
           +PS+     PG +Y  A +  D P  + P +
Sbjct: 53  DPSLLRQGVPGHHYGAAGSQQDMPYPRFPPY 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,453
Number of Sequences: 438
Number of extensions: 5036
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)