Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10k06
(718 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17) 29 0.063
SB_41091| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17) 31 1.2
SB_1272| Best HMM Match : Ras (HMM E-Value=8.9e-08) 29 2.8
SB_41815| Best HMM Match : zf-CXXC (HMM E-Value=3.5e-17) 29 5.0
SB_1834| Best HMM Match : efhand (HMM E-Value=1e-06) 29 5.0
SB_20145| Best HMM Match : WD40 (HMM E-Value=2.4e-09) 28 6.6
SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_47862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_28025| Best HMM Match : Peptidase_M10 (HMM E-Value=5.1e-36) 28 8.7
SB_33716| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_22666| Best HMM Match : Peptidase_M10 (HMM E-Value=9.3e-37) 28 8.7
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)
Length = 1440
Score = 28.7 bits (61), Expect(2) = 0.063
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 244 EVPTKPPPMRLNELPLYDNP 303
++P PPP+ +N P+YD P
Sbjct: 1152 QLPDPPPPITINVPPMYDRP 1171
Score = 25.0 bits (52), Expect(2) = 0.063
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Frame = +1
Query: 64 TMRRQLTNLDTDSLPPCPED--TSSEDDSHLDLYIIGKLWIDALRSALLGAKIVP-TVEA 234
T L D D PP P+D TSS ++ + D A + P T E
Sbjct: 1057 TPPENLDKKDDDDAPPAPQDESTSSRAVPRIEEPVNEPEVEDPQEEADTETETEPETAEE 1116
Query: 235 AKTEVPTKPPP 267
+++ P PPP
Sbjct: 1117 VESDEPLPPPP 1127
>SB_41091| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 33.5 bits (73), Expect = 0.18
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 283 LPLYD-NP-HQIYKDYLEDLEKCPKAKSKMLHEYLQPHVTALRMSAQCNYCDFKCELESM 456
LPL NP H++ Y E++E+ ++ S L PH+ A+ A YCD K LE+
Sbjct: 121 LPLVAVNPFHEVAALYDEEVEEKYRSASASESRELPPHIYAVGQKA---YCDLKRGLETS 177
Query: 457 KEEICVS 477
+ I VS
Sbjct: 178 NQSIIVS 184
>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 791
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 252 NKTASNAPKRASPVRQPTPDIQRLFGRSRKMSKSQIKD 365
NK+AS AP R S R P P G SR + K ++D
Sbjct: 566 NKSASKAPARTSAPRSP-PRQAEAIGSSRDVGKETVRD 602
>SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)
Length = 1850
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/93 (20%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Frame = +1
Query: 109 PCPEDTSSEDDSHLDLYIIGKLWIDALRSALLGAK-IVPTVEAAKTEVPTKPPPMRLNEL 285
P E+ +E +++ YI I + ++ ++ I ++A + P PPP+R +
Sbjct: 905 PTAEEVENELEAYQS-YIRSSGKIKQMHVTIITSQPITHFLDAGEDHAPESPPPLRKQLI 963
Query: 286 PLYDNPHQIYKDYL-EDLEKCPKAKSKMLHEYL 381
P+++ + ++ + +D +C ++ + HE L
Sbjct: 964 PIWNRAEIVNREVVNKDKLECLRSLQPLRHENL 996
>SB_1272| Best HMM Match : Ras (HMM E-Value=8.9e-08)
Length = 492
Score = 29.5 bits (63), Expect = 2.8
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 409 SAQCN-YCDFKCELESMKEEICVSMRKAKTDFKAYMRDPKNLELRHGVVGIGALSGYLFA 585
S C +CD ELES+ +E + K TD K + ++ L HGVVG + SG LFA
Sbjct: 162 SGDCKLFCDLS-ELESLVKE--EQVEKKTTDPKQEL----SVALGHGVVGAFSPSGNLFA 214
>SB_41815| Best HMM Match : zf-CXXC (HMM E-Value=3.5e-17)
Length = 906
Score = 28.7 bits (61), Expect = 5.0
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 13/105 (12%)
Frame = +1
Query: 154 LYIIGKLWIDALRSALLGAKIVPTVEAAKTEVPTKPPPMRLNEL-PLY-------DNPHQ 309
+ ++G W + +LL I P + +T V + RLN+L LY N +
Sbjct: 738 IQVLGLSWSTGITDSLLRDLISPPAPS-ETRVGAEDSKGRLNDLCTLYLTGNDVTGNTLR 796
Query: 310 IYKDYLEDLEK-----CPKAKSKMLHEYLQPHVTALRMSAQCNYC 429
+ Y L K CPK + + ++P+VT+ S C C
Sbjct: 797 LLAQYCPSLRKIDLSYCPKIYDEDVEVLVRPNVTSRNDSVTCKDC 841
>SB_1834| Best HMM Match : efhand (HMM E-Value=1e-06)
Length = 659
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 295 DNPHQIYKDYLEDLEKCPKAKSKMLHEYLQPHVTALRMSAQ 417
D+ H Y D + DLEK P + + ++Q LR A+
Sbjct: 521 DDDHDAYDDDVSDLEKMPLVEPTQFNPHVQSENLKLRPEAE 561
>SB_20145| Best HMM Match : WD40 (HMM E-Value=2.4e-09)
Length = 682
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = +1
Query: 292 YDNPH--QIYKDYLEDLEKCPKAKSK 363
Y+NP+ +IY Y+EDLE+ K K K
Sbjct: 158 YNNPYRWEIYDAYVEDLERQEKIKEK 183
>SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 819
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 163 IGKLWIDALRSALLGAKIVPTVEAAKTE-VPTKPPPMRLNELPLYDNPHQIYKDYLEDLE 339
+G+ W D +RSAL+ + PT A + +P+ M + + P + K+ D+
Sbjct: 460 LGQTWGDTIRSALMPGCVTPTTSLATIKSMPSSDMDMDTESSSVEEEPPKPIKETPPDIS 519
Query: 340 K 342
+
Sbjct: 520 Q 520
>SB_47862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -2
Query: 252 WHFCFGRFYCWHNFGTKQRTSQGVYP*FTYD 160
WH R + W + TK R+ + YP +T++
Sbjct: 31 WHQFIFRLFVWKSSTTKTRSKKDSYPVWTFE 61
>SB_28025| Best HMM Match : Peptidase_M10 (HMM E-Value=5.1e-36)
Length = 219
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Frame = -2
Query: 654 AQSPTCQSSKTGEEQTTRYTSF*SEKV--SAQSSYTHDTVSKLQILWISHIRFEVSLSFS 481
A+ P C GE T + S ++TH++ + +LW++ F +L
Sbjct: 71 AREPNCTDPFDGEGGTLAHASLAGADAHFDEDETFTHNSYDGINLLWVAVHEFGHNLGLD 130
Query: 480 HA 475
H+
Sbjct: 131 HS 132
>SB_33716| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 922
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 573 IPFRFKTRYTWSFVLHQSWSFGRW 644
I R RY + ++ QSWS+GRW
Sbjct: 751 IQIRRLKRYWFVGIVGQSWSYGRW 774
>SB_22666| Best HMM Match : Peptidase_M10 (HMM E-Value=9.3e-37)
Length = 359
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Frame = -2
Query: 654 AQSPTCQSSKTGEEQTTRYTSF*SEKV--SAQSSYTHDTVSKLQILWISHIRFEVSLSFS 481
A+ P C GE T + S ++TH++ + +LW++ F +L
Sbjct: 71 AREPNCTDPFDGEGGTLAHASLAGADAHFDEDETFTHNSYDGINLLWVAVHEFGHNLGLD 130
Query: 480 HA 475
H+
Sbjct: 131 HS 132
>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 650 KAPPAKA-PRLVKNKRPGIPRFEAKRYPLKAPIPTTPC 540
K+PPA P V K P P+F A P APIP PC
Sbjct: 746 KSPPAPPLPPKVTPKPPAPPQF-APVPPPCAPIPPMPC 782
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,883,952
Number of Sequences: 59808
Number of extensions: 436995
Number of successful extensions: 1574
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1574
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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