Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k06
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   0.54 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   0.54 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   1.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   1.2  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 412 LTFLKQSREAASTHAASLIWLLDIFLDLPNSL 317
           L F+  S + +STH   + W   + +++ NSL
Sbjct: 487 LIFMSSSLQWSSTHTLDVAWRRKVTIEILNSL 518


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 412 LTFLKQSREAASTHAASLIWLLDIFLDLPNSL 317
           L F+  S + +STH   + W   + +++ NSL
Sbjct: 525 LIFMSSSLQWSSTHTLDVAWRRKVTIEILNSL 556


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -1

Query: 139 RLRT-RCLLDMAVNCLCPNWLAVFSWFWSRIFIAVP 35
           R RT  C +D  +N      +  F+WFW   F  +P
Sbjct: 154 RYRTISCPIDGRLNSKQAAVIIAFTWFWVTPFTVLP 189


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -1

Query: 139 RLRT-RCLLDMAVNCLCPNWLAVFSWFWSRIFIAVP 35
           R RT  C +D  +N      +  F+WFW   F  +P
Sbjct: 154 RYRTISCPIDGRLNSKQAAVIIAFTWFWVTPFTVLP 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,304
Number of Sequences: 438
Number of extensions: 3882
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)