Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10k06
(718 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39450.1 68418.m04778 F-box family protein contains Pfam:PF00... 30 1.8
At4g34640.1 68417.m04919 farnesyl-diphosphate farnesyltransferas... 30 1.8
At4g34650.1 68417.m04920 farnesyl-diphosphate farnesyltransferas... 29 4.1
At5g63330.1 68418.m07948 DNA-binding bromodomain-containing prot... 28 5.4
At5g48657.2 68418.m06021 defense protein-related weak similarity... 28 7.1
At3g60090.1 68416.m06710 VQ motif-containing protein contains PF... 28 7.1
At1g70530.1 68414.m08117 protein kinase family protein contains ... 28 7.1
At1g63490.1 68414.m07179 transcription factor jumonji (jmjC) dom... 28 7.1
At3g56870.1 68416.m06326 hypothetical protein 27 9.4
At3g55550.1 68416.m06168 lectin protein kinase, putative similar... 27 9.4
At3g11600.1 68416.m01418 expressed protein weak similarity to B-... 27 9.4
At2g21140.1 68415.m02508 hydroxyproline-rich glycoprotein family... 27 9.4
>At5g39450.1 68418.m04778 F-box family protein contains Pfam:PF00646
F-box domain ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 579
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +1
Query: 499 FKAYMRDPKNLELRHGVVGIGALSGYLFASKRGIPGRLFFTSLGAL 636
F+ + D + H G G GY F PG LF TS G L
Sbjct: 479 FEGFPFDTNGEDFEHSYAGEGTAKGYGFRYPGYKPGTLFVTSKGLL 524
>At4g34640.1 68417.m04919 farnesyl-diphosphate farnesyltransferase 1
/ squalene synthase 1 (SQS1) identical to SP|P53799
Farnesyl-diphosphate farnesyltransferase (EC 2.5.1.21)
(Squalene synthetase) (SQS) (SS) (FPP:FPP
farnesyltransferase) {Arabidopsis thaliana};
non-consensus GC donor splice site at exon 3, squalene
synthase 2 (SQS2), Arabidopsis thaliana
Length = 410
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 193 SALLGAKIVPTVEAAKTEVPTKPPPMRLNELPLYDNPHQIYKDYLEDLEKCPKAK 357
+ L+G + AA +EV T N + L+ I +DYLED+ + PK++
Sbjct: 173 AGLVGLGLSKLFLAAGSEVLTPDWEAISNSMGLFLQKTNIIRDYLEDINEIPKSR 227
>At4g34650.1 68417.m04920 farnesyl-diphosphate farnesyltransferase 2
/ squalene synthase 2 (SQS2) nearly identical to
GI:2228795; synonomous with farnesyl-diphosphate
farnesyltransferase, FPP:FPP farnesyltransferase, and
squalene synthetase
Length = 378
Score = 28.7 bits (61), Expect = 4.1
Identities = 25/95 (26%), Positives = 41/95 (43%)
Frame = +1
Query: 193 SALLGAKIVPTVEAAKTEVPTKPPPMRLNELPLYDNPHQIYKDYLEDLEKCPKAKSKMLH 372
+ L+G + A++ E+ T N L+ I KDYLED+ + PK++
Sbjct: 173 AGLVGLGLSKIFIASELEILTPDWKQISNSTGLFLQKTNIIKDYLEDINERPKSRMFWPR 232
Query: 373 EYLQPHVTALRMSAQCNYCDFKCELESMKEEICVS 477
E +V L DFK E ++ K C++
Sbjct: 233 EIWGKYVDKLE--------DFKNEEKATKAVQCLN 259
>At5g63330.1 68418.m07948 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 477
Score = 28.3 bits (60), Expect = 5.4
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Frame = +1
Query: 214 IVPTVEAA--KTEVPTKPPPMRLNELPLYDNPHQI--YKDYLEDLEKCPKAKSKML--HE 375
++P +A ++E+P + PMR E + DN ++ K + D EK + M +
Sbjct: 273 VIPLTSSASLESEIPFEVAPMRKKEAAMNDNKLRVEPAKLVMTDGEKKKLGQDLMALEED 332
Query: 376 YLQPHVTALR----MSAQCNYCDFKCELESMKEEICVSMRKAKTDFKAYMRDPK 525
+ Q LR Q + + ++E++ +EI +RK D Y+R+ K
Sbjct: 333 FPQKIADLLREQSGSDGQSGEGEIEIDIEALSDEILFMVRKLLDD---YLREKK 383
>At5g48657.2 68418.m06021 defense protein-related weak similarity to
SP|Q8GYN5 RPM1-interacting protein 4 {Arabidopsis
thaliana}
Length = 219
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 655 STKPHLPKLQDW*RTNDQVYLVLKRKGIRSK 563
+ +PH+PK DW T D + V+ K +SK
Sbjct: 2 ANRPHVPKFGDW--TEDAPFTVVFEKASKSK 30
>At3g60090.1 68416.m06710 VQ motif-containing protein contains
PF05678: VQ motif
Length = 157
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 58 TKT-MRRQLTNLDTDSLPPCPEDTSSEDDSHLDLYIIG 168
TKT ++++TN + + P P+D+ E + LD IIG
Sbjct: 77 TKTGSKKKITNTNFPAPPGLPQDSGQEHTAELDNRIIG 114
>At1g70530.1 68414.m08117 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 646
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 521 GSLIYALKSVLAFLMLTQISSFMLSNSHLKSQ 426
G ++ SV+AF++L + F+L H K Q
Sbjct: 260 GVILAVTSSVVAFVLLVSAAGFLLKKRHAKKQ 291
>At1g63490.1 68414.m07179 transcription factor jumonji (jmjC)
domain-containing protein similar to PLU-1 protein
(GI:4902724) [Homo sapiens] and PLU1 (GI:22726257) [Mus
musculus]; similar to Retinoblastoma-binding protein 2
(RBBP-2) (SP:P29375) {Homo sapiens}; contains Pfam
PF02373: jmjC domain
Length = 1116
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/80 (21%), Positives = 35/80 (43%)
Frame = +1
Query: 169 KLWIDALRSALLGAKIVPTVEAAKTEVPTKPPPMRLNELPLYDNPHQIYKDYLEDLEKCP 348
K+W +A+ L + ++ K + +R+N +P +++ + KDY E+ K
Sbjct: 425 KIWAEAVSDCLSKVEGEVNDDSMKVHLEFIDELLRVNPVPCFNSGYLKLKDYAEEARKLS 484
Query: 349 KAKSKMLHEYLQPHVTALRM 408
+ L P +T L +
Sbjct: 485 EKIDSALSS--SPTITQLEL 502
>At3g56870.1 68416.m06326 hypothetical protein
Length = 670
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Frame = +1
Query: 76 QLTNL--DTDSLPPCPED-TSSEDDSHL 150
QLTN D+L P PED TSS+++ HL
Sbjct: 342 QLTNCCNSLDNLQPVPEDSTSSKEEDHL 369
>At3g55550.1 68416.m06168 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains protein kinase domain,
Pfam:PF00069; contains legume lectins alpha and beta
domains, Pfam:PF00138 and Pfam:PF00139
Length = 684
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 716 RAALPKWYIALLNISSVSFGKH 651
R +LP Y+ LLN S V+F H
Sbjct: 115 RGSLPSQYLGLLNSSRVNFSSH 136
>At3g11600.1 68416.m01418 expressed protein weak similarity to
B-type cyclin (GI:849074) [Nicotiana tabacum]
Length = 117
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 328 EDLEKCPKAKSKMLHEYLQPHVTALRMSAQCN 423
+D KCPK KS +L ++LQ + A + N
Sbjct: 76 DDDPKCPKCKSTVLLDFLQENAFAATTATAAN 107
>At2g21140.1 68415.m02508 hydroxyproline-rich glycoprotein family
protein identical to proline-rich protein 2 [Arabidopsis
thaliana] gi|7620011|gb|AAF64549
Length = 321
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 211 KIVPTVEAAKTEVPTKPPPMRLNELPLYDNPHQIYK 318
K P + +P KP P ++ P+Y P IYK
Sbjct: 182 KPCPPIYKPPVVIPKKPCPPKIAHKPIYKPPVPIYK 217
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,284,714
Number of Sequences: 28952
Number of extensions: 302690
Number of successful extensions: 1157
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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