Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k05
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1018 + 23326465-23326493,23326679-23327465                       28   6.7  
01_05_0600 + 23566223-23566355,23567752-23567855,23567958-235680...    27   8.9  

>07_03_1018 + 23326465-23326493,23326679-23327465
          Length = 271

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 240 PNTTLHCLLLSVALHRR*MLNPLRHPLEPLVTINSLLRL 124
           P+T    LLL  + H   +LNPL H L  L  + +LL L
Sbjct: 14  PSTEGLVLLLHESTHVARLLNPLTHQLTDLPPVTTLLDL 52


>01_05_0600 +
           23566223-23566355,23567752-23567855,23567958-23568053,
           23568134-23568253,23568543-23568710,23568921-23569012,
           23569739-23569857,23570547-23570670,23570801-23570924,
           23571291-23571359,23571470-23571561,23571645-23571722,
           23571927-23571994,23572073-23572209
          Length = 507

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 443 PTHCARAICSDVPVVRSGCMQTGTILLSYGNSHDIFVRLV 324
           PT  AR++ +   VVR G   TG  + + GNS+D+  +L+
Sbjct: 446 PTRPARSLSTLTRVVRRGAESTG--IEANGNSYDLSTKLL 483


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,050,958
Number of Sequences: 37544
Number of extensions: 299278
Number of successful extensions: 578
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)