Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10k05
(612 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.) 110 1e-24
SB_15463| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_36748| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_4931| Best HMM Match : Tctex-1 (HMM E-Value=1.7e-09) 37 0.015
SB_14302| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.026
SB_4828| Best HMM Match : Peptidase_C48 (HMM E-Value=3e-06) 33 0.14
SB_43326| Best HMM Match : TPR_2 (HMM E-Value=0.045) 31 0.97
SB_59030| Best HMM Match : Tctex-1 (HMM E-Value=8.2e-12) 30 1.3
SB_22664| Best HMM Match : HTH_8 (HMM E-Value=9.7) 29 3.0
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_51284| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_41265| Best HMM Match : FYVE (HMM E-Value=8.8) 27 9.1
SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 794
Score = 110 bits (264), Expect = 1e-24
Identities = 45/100 (45%), Positives = 69/100 (69%)
Frame = +3
Query: 153 MAQEDDEEDLTFNVDEVQQIVRDNVELCLGGNAYSHSRTPQWITIITEKTLARLNKLNKP 332
M + E+ +F VDEV I+++ +E +GGNAY H++ QW + + E+ L +L KL KP
Sbjct: 1 MDEYQSAEETSFVVDEVSNIIKEGIEGAIGGNAYQHNKVNQWTSNVVEQCLNQLTKLGKP 60
Query: 333 YKYIMRITITQKNGSGLHTAAAYYWDIATDGTCTVRWENK 452
+KYI+ I QKNG+GLHT+++ YWD TDG+CT++ +K
Sbjct: 61 FKYIVTCVIMQKNGAGLHTSSSCYWDNTTDGSCTIKQPDK 100
>SB_15463| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/106 (21%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Frame = +3
Query: 171 EEDLTFNVDEVQQIVRDNVELCLGGNAYSHSRTPQWITIITEKTLARLNKLN-KPYKYIM 347
E D FNV EV++I+ + +E L Y + +++ R+ L K +K +
Sbjct: 210 EPDKRFNVQEVKEIMEETLEESLKDEKYDAIKCRGMSRSLSQTICERVKLLGFKQFKIVC 269
Query: 348 RITITQKNGSGLHTAAAYYWDIATDGTCTVRWENKYMYCIVNIWAL 485
+TI + N G+ A+ + W+ D + + ++ + ++A+
Sbjct: 270 TVTIGEMNNQGIRVASRFLWNEKHDNWVDSVFRSNELFAVAVVYAV 315
>SB_36748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 329
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/98 (20%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Frame = +3
Query: 195 DEVQQIVRDNVELCLGGNAYSHSRTPQWITIITEKTLARLNKLNKP-YKYIMRITITQKN 371
D+++ ++R ++ L Y +R + +++ + L L L P YK++ + I Q
Sbjct: 230 DKIRDVIRKHLRF-LETTEYEVNRCREISKLLSNRILKDLKLLGFPRYKFVSSVCIGQML 288
Query: 372 GSGLHTAAAYYWDIATDGTCTVRWENKYMYCIVNIWAL 485
G + A+ WD +D + +E+ ++ + ++A+
Sbjct: 289 GQSVRIASRCVWDTESDNFVSESYESLSLFAVGTVFAV 326
>SB_4931| Best HMM Match : Tctex-1 (HMM E-Value=1.7e-09)
Length = 259
Score = 36.7 bits (81), Expect = 0.015
Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
Frame = +3
Query: 195 DEVQQIVRDNVELCLGGNAYSHSRTPQWITIITEKTLARLNKLNKP-YKYIMRITITQKN 371
+ ++ +++D +E L Y + IT + R+ +L P YKY+ + + N
Sbjct: 159 ERIEPLIKDTLEEHLDNQTYEPNFCRLAAIKITNQLKERMKRLRYPRYKYVCHAMLGEIN 218
Query: 372 GSGLHTAAAYYWDIATDGTCTVRWENKYMYCIVNIWAL 485
+ + WD D + N +Y I ++A+
Sbjct: 219 NQDVRAVSRCAWDTCVDSFAQYEYRNCSLYGIGLVYAI 256
>SB_14302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 35.9 bits (79), Expect = 0.026
Identities = 21/112 (18%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Frame = +3
Query: 162 EDDEEDLTFNVDEVQQIVRDNVELCLGGNAYSHSRTPQWITIITEKTLARLNKLN-KPYK 338
+D E F+ ++ I + ++ L G +Y + + ++E + L+ YK
Sbjct: 14 QDIELGKRFSASIIENISKVILQERLEGMSYEATECSKLAREMSETIRNEVKALSWDRYK 73
Query: 339 YIMRITITQKNGSGLHTAAAYYWDIATDGTCTVRWENKYMYCIVNIWALALQ 494
++ ++I GLH ++ W TDG+ T + N ++ + ++ + ++
Sbjct: 74 IVVMVSIGSLKDQGLHISSRCLWYPNTDGSATAVYRNTSLFAVATVFGIYVE 125
>SB_4828| Best HMM Match : Peptidase_C48 (HMM E-Value=3e-06)
Length = 512
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +3
Query: 165 DDEEDLTFNVDEVQQIVRDNVELCLGGNAYSHSRTPQWITIITEKTLARLNKLNKPYKYI 344
D E L F VD+ + R+++ CL ++ + I ++T+ KL P
Sbjct: 44 DQSESLLFYVDQNAALTREDISFCLKDAYFTEVEQDEMIAVVTKSFRDAARKLKNPIAES 103
Query: 345 MRITI 359
ITI
Sbjct: 104 NTITI 108
>SB_43326| Best HMM Match : TPR_2 (HMM E-Value=0.045)
Length = 261
Score = 30.7 bits (66), Expect = 0.97
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 269 ATVDNYNHREDLSSIE*IKQALQIYHENYHNSEEWFRFA 385
AT NY H +DL+S+ ++I HENY + E R A
Sbjct: 114 ATKVNYRHVDDLASVWCEVAEMEIRHENYSKALELIRKA 152
>SB_59030| Best HMM Match : Tctex-1 (HMM E-Value=8.2e-12)
Length = 178
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/98 (18%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Frame = +3
Query: 198 EVQQIVRDNVELCLGGNAYSHSRTPQWITIITEKTLARLNKLN--KPYKYIMRITITQKN 371
++Q ++ + ++ L YS + + + +R+ L K Y++I ++I +
Sbjct: 78 DIQCLMDEILDDTLSSEHYSAESSRVLCLGLADSIKSRVKGLGMAKRYRFICHVSIGSCS 137
Query: 372 GSGLHTAAAYYWDIATDGTCTVRWENKYMYCIVNIWAL 485
G GL A+ W+ D T + N ++ + ++ +
Sbjct: 138 GQGLLIASKSVWNEKRDSFVTSTFRNASLFAVATVFGV 175
>SB_22664| Best HMM Match : HTH_8 (HMM E-Value=9.7)
Length = 161
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +3
Query: 165 DDEEDLTFNVDEVQQIVRDNVELCLGGNAYSHSRTPQWITIITEKTLARLNKLNK 329
D E L F VD+ + R+++ CL ++ + I ++T+ KL K
Sbjct: 44 DQLESLLFYVDQNAALTREDISFCLKDAYFTEVEQDEMIAVVTKSFRDVARKLKK 98
>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1906
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +3
Query: 156 AQEDDEEDLTFNVDEVQQIVRDNVELCLGGNAYSHSRTPQWITIITEKTLARLNKLNK 329
A+E + ++L +E++++ N EL Y +T TE+ L L +LN+
Sbjct: 1393 ARESEGKELVLRTEEIEKLYERNKELREKERDYEELKTKMRDLSQTERKLEHLQRLNQ 1450
>SB_51284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 168 DEEDLTFNVDEVQQIVRDNVELCLG-GNAYSHSRTPQWITIITEKTLARLNKL 323
+ D+ V ++ ++ DN+E C+ SR P W+T + + L +K+
Sbjct: 251 ESNDVNEAVRNLENLIHDNLEKCMPLKTVRMSSRDPLWMTPLVKSLLKTKSKI 303
>SB_41265| Best HMM Match : FYVE (HMM E-Value=8.8)
Length = 57
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 206 TDSKRQCRVVFGRERL*SLKNATVDNYNHREDLSS 310
+D K+QC+V FGR + S+++ V N +LS+
Sbjct: 20 SDQKKQCKVSFGRRFVLSIEDIKVCFENASTELSN 54
>SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = -2
Query: 497 YLKSKRPYIHNAIHVLIFPTHCARAICS---DVPVVRSGCMQTGTILLSYGNSH 345
Y K P H T ++A+ + V V ++G TGT LL YG+ H
Sbjct: 288 YTHYKTPLCLTINHTATDLTRTSKAVANATLTVLVTKNGTQATGTPLLKYGHPH 341
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,114,699
Number of Sequences: 59808
Number of extensions: 363131
Number of successful extensions: 776
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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