Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k05
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.4  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   4.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.1  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            22   5.4  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 574 LLRNISNT*SSHHHTL 527
           LL N+ +T   HHHT+
Sbjct: 404 LLNNVYSTPGPHHHTM 419


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 497 YLKSKRPYIHNAIHVLIFPTHC 432
           +LK  RPY+   +H ++   HC
Sbjct: 26  FLKD-RPYVQKQLHCILDRGHC 46


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 5/18 (27%), Positives = 13/18 (72%)
 Frame = -1

Query: 582 VYCFCETFRTPSRLIIIH 529
           ++C  ++ RTPS + +++
Sbjct: 72  IFCAAKSLRTPSNMFVVN 89


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 5/18 (27%), Positives = 10/18 (55%)
 Frame = +2

Query: 320 IKQALQIYHENYHNSEEW 373
           +K  +++YH  +    EW
Sbjct: 57  LKDGIELYHHKFFQVHEW 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,779
Number of Sequences: 438
Number of extensions: 3892
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)