Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k05
         (612 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20465.1 68415.m02389 expressed protein                             29   3.2  
At3g09560.2 68416.m01136 lipin family protein contains Pfam prof...    28   5.6  
At3g09560.1 68416.m01135 lipin family protein contains Pfam prof...    28   5.6  

>At2g20465.1 68415.m02389 expressed protein 
          Length = 89

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = -1

Query: 612 CFTKLFYLSLVYCFCETFRTPSRLIIIH*K*RYSPWVSIFEEQAPIYSQCNT-C--TYFP 442
           CFT LF +S ++C   T R+P   I    + R + +   F + A   + C+  C    F 
Sbjct: 12  CFTILFIISSIHCLPTTARSPGYEIGPQRRRRVTCFSFSFCKPARGLASCDLFCKRLKFE 71

Query: 441 NALCTCHL*RC 409
           + LCT  L +C
Sbjct: 72  SGLCTGDLEKC 82


>At3g09560.2 68416.m01136 lipin family protein contains Pfam
           profile: PF04571 lipin, N-terminal conserved region
          Length = 904

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +3

Query: 162 EDDEEDLTFNVDEVQQIVRDNVELCLGGNAYSHSRTPQWITIITEK 299
           E + E+L  N  +      D  E C G   ++ S TP W T   +K
Sbjct: 208 EQEAENLRLNTPQFHLAPGDGTEFCEGNTEFASSETP-WDTEYIDK 252


>At3g09560.1 68416.m01135 lipin family protein contains Pfam
           profile: PF04571 lipin, N-terminal conserved region
          Length = 904

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +3

Query: 162 EDDEEDLTFNVDEVQQIVRDNVELCLGGNAYSHSRTPQWITIITEK 299
           E + E+L  N  +      D  E C G   ++ S TP W T   +K
Sbjct: 208 EQEAENLRLNTPQFHLAPGDGTEFCEGNTEFASSETP-WDTEYIDK 252


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,477,974
Number of Sequences: 28952
Number of extensions: 250345
Number of successful extensions: 498
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)