Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k04
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    29   0.62 
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    28   1.1  
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom...    27   2.5  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    27   3.3  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    26   4.4  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   5.8  

>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +1

Query: 163 EINQKLDSSKKGLVLGVYQCGKKLELTPVGQELDQKSGGKILQHLNELSERMKLGQAFVL 342
           E N   + SK  +++G     K   L P   E    +  K LQH  ++S +  L  A + 
Sbjct: 367 EQNNPENGSKVTVMMGGSAYTKNTSLIPTNPEEAVNNALKALQHTLKISSKPTLTNATLQ 426

Query: 343 TDVVPEY 363
            + +P+Y
Sbjct: 427 QNCIPQY 433


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
 Frame = +1

Query: 124 IRKFSDSCQEVSGEINQKLDSSKKGLVLGVYQCGKKLELTPVGQELDQKSGGKILQHLN- 300
           +++ + S ++ S E N+KL SS+       +   ++++L+P  QE D+K    + QH+  
Sbjct: 73  LQRSASSSEKGSDEDNEKLGSSEDDEFDDDFDTWEQVDLSPNKQE-DKKDLHIVTQHITP 131

Query: 301 ELSERMKLGQA 333
           +L++  K G +
Sbjct: 132 QLTKESKKGSS 142


>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 334 FVLTDVVPEYSAVALASLGPKDPGYNQLEALDETRENLRWAV 459
           F +T+++ E S V    LGPKDP +    A      ++ W +
Sbjct: 182 FKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEI 223


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 346 RSVQTPGLASFALTIHSNVEVSFPQISDQAPDRLESTL 233
           RSV  P L++ A     NV  + PQ +++  ++L   L
Sbjct: 127 RSVSAPSLSALATQAQRNVSKTLPQSTNETIEKLRQFL 164


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 406 SQGPLALTKRALQQSTPGPRRSVQTPGLASFALTIH 299
           SQ P  L  +    + PG R+ V    +A  +LT+H
Sbjct: 740 SQMPADLQAKIFDSAEPGVRKVVVATNIAETSLTVH 775


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 485 IEGVEISPCRLTRNTTLQPRLPN*PPGDLKSSD 583
           ++ +E +P  LTR     P L N  P DL + +
Sbjct: 384 LQNLEEAPMNLTRPINANPHLTNHSPNDLTNGE 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,191,573
Number of Sequences: 5004
Number of extensions: 41254
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)