Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k04
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0138 + 23067885-23068245,23068393-23068634                       33   0.21 
11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733     30   1.5  
03_01_0277 - 2127874-2128026,2128134-2129785,2133121-2133172           29   3.4  
06_03_1330 - 29375494-29376912                                         28   6.0  
12_02_1081 + 25914180-25914371,25918121-25919104                       28   7.9  
12_01_0620 + 5109756-5109758,5110016-5110255,5110264-5110653,511...    28   7.9  

>04_04_0138 + 23067885-23068245,23068393-23068634
          Length = 200

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 454 PNEGFP*SHPKLRADCSQGPLALTKRALQQSTPGPRRSVQTPGLAS 317
           P    P S P   A  +  P+ +T+   QQ TP P+ S QTP  +S
Sbjct: 131 PPVSVPRSTPNSTAPSTPTPVTVTRAPPQQMTPSPKTSSQTPEYSS 176


>11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733
          Length = 329

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 6   NLYNIFFYFTTECF*IIYNGFFKSIF 83
           N  N+  YF T+ F   + G+FKSIF
Sbjct: 91  NQANVIRYFPTQAFNFAFKGYFKSIF 116


>03_01_0277 - 2127874-2128026,2128134-2129785,2133121-2133172
          Length = 618

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 451 WAVGAGVRVLQNRGCG 498
           W +G  +RVLQN GCG
Sbjct: 533 WDIGCPIRVLQNDGCG 548


>06_03_1330 - 29375494-29376912
          Length = 472

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 327 PGVCTDRRGPGVLCCSARFVRAKGPWL 407
           PGVCT  +       +ARF  A+ PWL
Sbjct: 40  PGVCTAWQSADAASATARFRAAQPPWL 66


>12_02_1081 + 25914180-25914371,25918121-25919104
          Length = 391

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 500 ISPCRLTRNTTLQPRLPN*PPGDLKSS 580
           + PCRL R    +PR PN  PG +  S
Sbjct: 13  LGPCRLRRQELHRPRRPNHVPGAVSHS 39


>12_01_0620 +
           5109756-5109758,5110016-5110255,5110264-5110653,
           5110723-5110995
          Length = 301

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 262 DQKSGGKILQHLNELSERMKLGQAFVLTDVVPEYSAVALASLGPKDPGYN 411
           D     +I +H  E+  +MK  +A+ L DVV E     LA  G   P  N
Sbjct: 11  DDAEAREIERHYKEVKRKMKTRKAYNLNDVVFEGYRSLLAMHGRAKPDEN 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,197,261
Number of Sequences: 37544
Number of extensions: 275947
Number of successful extensions: 805
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)