Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k04
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54640| Best HMM Match : TolA (HMM E-Value=1.7)                      32   0.37 
SB_34256| Best HMM Match : CRA_rpt (HMM E-Value=4)                     31   0.86 
SB_43029| Best HMM Match : Extensin_1 (HMM E-Value=8.9)                30   1.5  
SB_7981| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17)                   28   6.1  
SB_7841| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_19054| Best HMM Match : Tropomyosin (HMM E-Value=0.16)              28   8.0  

>SB_54640| Best HMM Match : TolA (HMM E-Value=1.7)
          Length = 589

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 94  CVMNKLNIKLIRKFSDSCQEVSGEINQKLDSSKKGLVLGVYQCGKKL 234
           C+ NKL+ K   +   + ++   ++ Q +D ++KG  L VY C K L
Sbjct: 234 CLQNKLDHKFHNQVQQAKEQTEYQVRQ-VDKNRKGYKLSVYACTKPL 279


>SB_34256| Best HMM Match : CRA_rpt (HMM E-Value=4)
          Length = 171

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 22/91 (24%), Positives = 37/91 (40%)
 Frame = +1

Query: 85  KTRCVMNKLNIKLIRKFSDSCQEVSGEINQKLDSSKKGLVLGVYQCGKKLELTPVGQELD 264
           ++R V  K    L +   DS  ++  E+  +L   +         C K    T   QE+ 
Sbjct: 57  RSREVATKARECLEKLHGDSGTKLDKEVLTRLSDLRSNSSEDQDYCTKSCSSTDEVQEIS 116

Query: 265 QKSGGKILQHLNELSERMKLGQAFVLTDVVP 357
                +I     +L E+ K   AFV+T++ P
Sbjct: 117 TPPAARIKPSARKLPEKQKREDAFVMTELCP 147


>SB_43029| Best HMM Match : Extensin_1 (HMM E-Value=8.9)
          Length = 199

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/101 (20%), Positives = 38/101 (37%)
 Frame = +1

Query: 91  RCVMNKLNIKLIRKFSDSCQEVSGEINQKLDSSKKGLVLGVYQCGKKLELTPVGQELDQK 270
           R +   L +  ++   D   E   +  ++  S +       Y     L+  PV + +   
Sbjct: 48  RRISQSLRLSFVKDDDDVFHEKDSKTEKEAKSQQSSPRSSSYSHTPPLKRPPVRRTVSDT 107

Query: 271 SGGKILQHLNELSERMKLGQAFVLTDVVPEYSAVALASLGP 393
            GG++ +    L +  +L   FV  D+    S V L   GP
Sbjct: 108 IGGRLRKISGILGDSRRLSDEFVKEDLPIPVSVVQLEETGP 148


>SB_7981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
 Frame = +1

Query: 148 QEVSGEINQKLDSSKKGLVLGVYQCGKKLELTPVGQELDQKSGGKILQHLNELSERMKLG 327
           +EV+ E  ++++  ++G  +   + GK++     G+E++Q+ G ++ Q   E     K+G
Sbjct: 17  EEVNKEEGEEVNQ-EEGEEVNEEEEGKEMNEEEEGEEVNQEEGEEVNQEEGEEVNEGKIG 75

Query: 328 QAFVLTDVVPE--YSAVALASLGPKDPG 405
           ++ +     PE       +    P DPG
Sbjct: 76  KSVLRPCTGPEMIQGTETIPKSSPTDPG 103


>SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17)
          Length = 1590

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/75 (25%), Positives = 27/75 (36%)
 Frame = -2

Query: 463  LQQPNEGFP*SHPKLRADCSQGPLALTKRALQQSTPGPRRSVQTPGLASFALTIHSNVEV 284
            + Q   G P   P +  D    P        + +TP     V TP LA+ AL +  + E 
Sbjct: 1484 IPQAPSGAPAKTPSMAPDAPSPPSQTCHHTNRTATPATTPGVPTPDLATAALALQVSPEE 1543

Query: 283  SFPQISDQAPDRLES 239
                   Q P   E+
Sbjct: 1544 PDAAEEKQGPSTPEA 1558


>SB_7841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 484 FVGPSHQLQQPNEGFP*SHPKLRADCSQGPLALTKRALQQSTPG 353
           FV P +  ++PNEG       +    +  P    K+A +  TPG
Sbjct: 64  FVNPENSFKKPNEGITIGDKTIPYPYADQPTCANKQAHKSRTPG 107


>SB_19054| Best HMM Match : Tropomyosin (HMM E-Value=0.16)
          Length = 375

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 25/113 (22%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
 Frame = +1

Query: 166 INQKLDSSKKGLVLGVYQCGKKLELTPVG-QELDQKSGGKILQHLNELSERMKLGQAFV- 339
           I++K+  +++ + +G  + GK+ ++     Q +D+K G  + QH+  + E+++  +  V 
Sbjct: 75  IDEKVQDAEQKVTMGFQEVGKEFQVVGQHVQSVDEKVG-VVAQHVQSVDEKVQDAEQKVT 133

Query: 340 --LTDVVPEYSAVA--LASLGPKDPGYNQ-LEALDETRENLRWAVGAGVRVLQ 483
               +V  E+  V     S+  K     Q ++ + E  +N+   V  G++ LQ
Sbjct: 134 MGFQEVGKEFQVVGQHFQSVDEKVQDVGQHVQTVHEKVQNIDQNVAKGLQNLQ 186


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,144,355
Number of Sequences: 59808
Number of extensions: 301504
Number of successful extensions: 778
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)