Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k04
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016414-4|AAG24021.2|  230|Caenorhabditis elegans Serpentine re...    31   0.58 
AF016414-3|AAW88405.1|  329|Caenorhabditis elegans Serpentine re...    31   0.58 
CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical ...    31   1.0  
Z81029-1|CAB02697.1|  465|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical p...    28   7.1  

>AF016414-4|AAG24021.2|  230|Caenorhabditis elegans Serpentine
           receptor, class h protein210, isoform a protein.
          Length = 230

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +2

Query: 398 TLATISSKLWMRLGKTFVGLLELV*GSYKIEGVEISPCRLTRNTTLQPRLP 550
           T    SSK W R  K F+G+L +V  +Y I     +P +      +  RLP
Sbjct: 124 TFLASSSKGWTRFRKAFIGILHVVAWTYFIPFTLTTPDQAVAGPAILQRLP 174


>AF016414-3|AAW88405.1|  329|Caenorhabditis elegans Serpentine
           receptor, class h protein210, isoform b protein.
          Length = 329

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +2

Query: 398 TLATISSKLWMRLGKTFVGLLELV*GSYKIEGVEISPCRLTRNTTLQPRLP 550
           T    SSK W R  K F+G+L +V  +Y I     +P +      +  RLP
Sbjct: 124 TFLASSSKGWTRFRKAFIGILHVVAWTYFIPFTLTTPDQAVAGPAILQRLP 174


>CU457741-1|CAM36342.1|  347|Caenorhabditis elegans Hypothetical
           protein C42C1.1 protein.
          Length = 347

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 67  FLKVFSKTRCVMNKLNIKLIRKFSDSCQE 153
           FL V S T C+ N LN K+ +K+  +CQ+
Sbjct: 168 FLLVLSATSCLGNMLNYKINQKYYRACQQ 196


>Z81029-1|CAB02697.1|  465|Caenorhabditis elegans Hypothetical
           protein C01A2.1 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
 Frame = +1

Query: 133 FSDSCQEVSG---EINQKLDS--SKKGLVLGVYQCGKKLELTPVGQELDQKS-GGKILQH 294
           F++ C E++    EIN+  D   ++ G+ +G Y    K  L  + Q  DQKS  GKI  +
Sbjct: 132 FTNECDEIANVLREINRLEDYGLARNGIRVG-YLEQMKFNLEEMFQ--DQKSMKGKITLN 188

Query: 295 LNELSERMK 321
           + ELSE MK
Sbjct: 189 IGELSETMK 197


>U97005-12|AAB52289.1| 1121|Caenorhabditis elegans Hypothetical
            protein F19F10.11a protein.
          Length = 1121

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/71 (23%), Positives = 34/71 (47%)
 Frame = +1

Query: 91   RCVMNKLNIKLIRKFSDSCQEVSGEINQKLDSSKKGLVLGVYQCGKKLELTPVGQELDQK 270
            +C+  K  +K ++K    C +++      +  S++   L  +   +KLELT   +  + K
Sbjct: 989  KCISYKFTVKYLQKTCAMC-DLNFYRKDMMSISREAWALAQWIDCRKLELTDSWKHKNIK 1047

Query: 271  SGGKILQHLNE 303
              GK+ + L E
Sbjct: 1048 DTGKLYEALKE 1058


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,125,300
Number of Sequences: 27780
Number of extensions: 245385
Number of successful extensions: 644
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)