Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k03
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    29   0.54 
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    27   3.8  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   5.0  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   8.8  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   8.8  

>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 588 RAGTNFAVICNGDGSRVLLCYLLLYAINILYFEKRTVFP 704
           +A  +  + CN DGS  L  +++ YA N   FE+  +FP
Sbjct: 207 KAKVSLIMCCNADGSERLPLWIVGYAQNPRSFEQCGIFP 245


>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 205 GEGTSHLYTEYKKYQTMHAQLTKDLAGK 288
           G+G +H    Y+ Y   HA +  DLAG+
Sbjct: 156 GDGVTHTVPIYEGYALPHAIMRLDLAGR 183


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 521 NLIWIWIHQRRNRRCTGLGN 580
           N++W+W+ +  N R   +GN
Sbjct: 417 NILWLWLFRMLNLRIASMGN 436


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 445 FENTCISAYCTQTHPPLQRTSPLPIKPDMDMDTPEKKPAM-HRSWQLMT 588
           F  T +    T+ + PL+ TSP    P    D+P K P   H ++  +T
Sbjct: 170 FSPTSVERRFTEWNVPLRETSP---SPSETADSPNKLPKQKHPAYSFVT 215


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 384 NIKFVSCTASSYACCNPKYWVRKHMYFRLLYAN 482
           N+K++SCT    +  +P     KH+    L+AN
Sbjct: 707 NLKYLSCTNCEMSYVSPNLGKLKHLVHLDLHAN 739


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,016,772
Number of Sequences: 5004
Number of extensions: 61811
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)