Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k03
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_27025| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-28)                 30   1.8  
SB_37785| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_40908| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)                     28   9.4  

>SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 601 ILQLSVTATALAFYYVIYCYMQLIYYTLRSALYFHN 708
           IL+   + T   FYY  Y  ++ ++YT ++ LYF N
Sbjct: 146 ILRKLHSTTQATFYYANYIILRKLHYTAQTTLYFAN 181


>SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 451 NTCISAYCTQTH-PPLQRTSPLPIKP 525
           N C+   CT +H PP+++ SPL  KP
Sbjct: 470 NCCLGKTCTFSHPPPIKKVSPLKTKP 495


>SB_27025| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-28)
          Length = 675

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 520 LLATGSYVARADVFAYNKRKYMCF 449
           LLA   Y+AR +V+ Y   KY+CF
Sbjct: 153 LLAPLLYLARGNVYVYQPEKYLCF 176


>SB_37785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 519

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 130 NCTSEVTDVKF*FGMVDKTDSNTSLGEGTSHLYTEYKKY 246
           N   ++ D  F  GM   TD N S  E T H+  +Y KY
Sbjct: 329 NKCKQMVDCAFSSGMYSDTDENRSFSENTPHM-IKYLKY 366


>SB_40908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 268 SAEHA*FDISYIRYRDAKFPHQAKCSNQFYQPFQI 164
           S E A F   Y +YR+AKF  Q   S+  YQ  ++
Sbjct: 59  STERAKFKGKYDKYRNAKFIDQIDTSDNLYQEVKL 93


>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
          Length = 152

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 205 GEGTSHLYTEYKKYQTMHAQLTKDLAGK 288
           G+G SH    Y+ Y   HA L  DLAG+
Sbjct: 35  GDGVSHNVPIYEGYALPHAILRLDLAGR 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,904,623
Number of Sequences: 59808
Number of extensions: 448563
Number of successful extensions: 1264
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)