Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10k03
(753 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g06930.1 68418.m00783 expressed protein 29 3.3
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 29 4.4
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 29 4.4
At3g63120.1 68416.m07089 cyclin family protein similar to cyclin... 29 4.4
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 29 4.4
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 29 4.4
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 29 4.4
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 29 4.4
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 29 4.4
At1g27940.1 68414.m03423 multidrug resistance P-glycoprotein, pu... 29 4.4
At4g20800.1 68417.m03019 FAD-binding domain-containing protein s... 28 5.8
At2g40070.1 68415.m04923 expressed protein 28 5.8
At1g28010.1 68414.m03430 multidrug resistance P-glycoprotein, pu... 28 5.8
>At5g06930.1 68418.m00783 expressed protein
Length = 657
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 619 LQITAKFVPALSLIAKTCASPVSSLVYPYPYQVLL 515
+ +T V LSL+ K+C S VS L Y V+L
Sbjct: 255 ISVTKNIVSGLSLLLKSCGSDVSRLTYWLSNTVML 289
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 205 GEGTSHLYTEYKKYQTMHAQLTKDLAGK 288
G+G SH Y+ Y HA L DLAG+
Sbjct: 158 GDGVSHTVPIYEGYALPHAILRLDLAGR 185
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 205 GEGTSHLYTEYKKYQTMHAQLTKDLAGK 288
G+G SH Y+ Y HA L DLAG+
Sbjct: 158 GDGVSHTVPIYEGYALPHAILRLDLAGR 185
>At3g63120.1 68416.m07089 cyclin family protein similar to cyclin 2
[Trypanosoma brucei] GI:7339572, cyclin 6 [Trypanosoma
cruzi] GI:12005317; contains Pfam profile PF00134:
Cyclin, N-terminal domain
Length = 221
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 345 TVRMFEDK*KVEVNIKFVSCTASSYACCNPKYWVRKHMYFRLLYANTSAL 494
+V +F+ + E++I Y+CC+P +V H+Y T AL
Sbjct: 61 SVTVFDGRSPPEISIAHYLDRIFKYSCCSPSCFVIAHIYIDHFLHKTRAL 110
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 205 GEGTSHLYTEYKKYQTMHAQLTKDLAGK 288
G+G SH Y+ Y HA L DLAG+
Sbjct: 158 GDGVSHTVPIYEGYALPHAILRLDLAGR 185
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 205 GEGTSHLYTEYKKYQTMHAQLTKDLAGK 288
G+G SH Y+ Y HA L DLAG+
Sbjct: 158 GDGVSHTVPIYEGYALPHAILRLDLAGR 185
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 205 GEGTSHLYTEYKKYQTMHAQLTKDLAGK 288
G+G SH Y+ Y HA L DLAG+
Sbjct: 158 GDGVSHTVPIYEGYALPHAILRLDLAGR 185
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 205 GEGTSHLYTEYKKYQTMHAQLTKDLAGK 288
G+G SH Y+ Y HA L DLAG+
Sbjct: 159 GDGVSHTVPIYEGYALPHAILRLDLAGR 186
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 205 GEGTSHLYTEYKKYQTMHAQLTKDLAGK 288
G+G SH Y+ Y HA L DLAG+
Sbjct: 158 GDGVSHTVPIYEGYALPHAILRLDLAGR 185
>At1g27940.1 68414.m03423 multidrug resistance P-glycoprotein,
putative similar to mdr-like P-glycoprotein atpgp1
GI:3849833 from [Arabidopsis thaliana]
Length = 1245
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Frame = +1
Query: 583 MTELVQILQLSVTATALAFYY-------VIYCYMQLIYYTLRSALYFHNADG 717
++ +VQ L L+VTA ALAF+Y V C+ LI +L L+ G
Sbjct: 802 LSTIVQNLSLTVTALALAFFYSWRVAAVVTACFPLLIAASLTEQLFLKGFGG 853
>At4g20800.1 68417.m03019 FAD-binding domain-containing protein
similar to SP|P93479 Reticuline oxidase precursor (EC
1.5.3.9) (Berberine-bridge-forming enzyme) {Papaver
somniferum}; contains Pfam profile PF01565: FAD binding
domain
Length = 528
Score = 28.3 bits (60), Expect = 5.8
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Frame = -3
Query: 490 ADVFAYNKRKYMCFRTQYFGLQQA*EEAVQETNL-ILTSTFH-----LSSNIRTVFSNHR 329
AD A+ RK F+ QYF L + NL ++ +H +SSN R F N+R
Sbjct: 414 ADATAFPHRKGNLFKIQYFALWT--DANATYANLGLMRDIYHEMEPYVSSNPREAFLNYR 471
Query: 328 DLQPFQN 308
D+ N
Sbjct: 472 DIDVGSN 478
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 463 SAYCTQTHPPLQRTSPLPIKPDMDMDTPEKKPAMHRS 573
SA T +P + + P P M TP K PA+ R+
Sbjct: 325 SAATTTANPTISQIKPSSPAPAKPMPTPSKNPALSRA 361
>At1g28010.1 68414.m03430 multidrug resistance P-glycoprotein,
putative similar to mdr-like P-glycoprotein GI:3849833
from [Arabidopsis thaliana]
Length = 1247
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Frame = +1
Query: 583 MTELVQILQLSVTATALAFYY-------VIYCYMQLIYYTLRSALYFHNADG 717
++ +VQ L L++TA ALAF+Y V C+ LI +L L+ G
Sbjct: 804 LSTIVQNLSLTITALALAFFYSWRVAAVVTACFPLLIAASLTEQLFLKGFGG 855
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,217,606
Number of Sequences: 28952
Number of extensions: 303988
Number of successful extensions: 798
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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