Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10k02
(734 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0235 + 6644083-6644125,6645218-6645315,6645448-6645498,664... 220 1e-57
07_01_0718 + 5484553-5484601,5484836-5484933,5485028-5485078,548... 205 3e-53
08_02_0707 - 20212190-20214592 31 0.72
11_04_0414 + 17386806-17387936 29 3.8
01_06_1795 - 39925019-39926029,39926265-39926408,39927200-399272... 29 3.8
06_03_1359 + 29554078-29554375,29554470-29554655,29554768-295549... 28 8.8
>03_02_0235 +
6644083-6644125,6645218-6645315,6645448-6645498,
6645573-6645686,6645771-6645971,6646047-6646148,
6647245-6647352,6647745-6647995,6648108-6648279,
6648341-6648397,6648555-6648710,6648807-6648857,
6649053-6649193,6649270-6649464,6649534-6649665,
6649768-6649941,6650396-6650635,6650761-6650955
Length = 826
Score = 220 bits (537), Expect = 1e-57
Identities = 110/215 (51%), Positives = 141/215 (65%)
Frame = +2
Query: 77 QSIMKARRDGKEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEEL 256
Q MK D ++ + + F ++K +LQEAR F+ + RKC ++TK+LYLLNQGE
Sbjct: 3 QPYMKKDDDDEDVEYSPFYGIEKGAVLQEARAFHDPQLDARKCSQVITKLLYLLNQGETF 62
Query: 257 TTQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYR 436
T EAT++FFA TKLFQSKD LRRLVYL IKELSP + +VIIVTSSL KDM K D YR
Sbjct: 63 TKVEATEVFFAVTKLFQSKDAGLRRLVYLMIKELSPSSDEVIIVTSSLMKDMNSKTDMYR 122
Query: 437 PAAIRALCSITDSTMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXXXPDLVRRWINEA 616
AIR LC I D T+L IERY+KQAIVDKNP P++V+RW NE
Sbjct: 123 ANAIRVLCRIIDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQANPEIVKRWSNEV 182
Query: 617 QEAMTSDHVMVSYHALAVVAGARRNDRLSTVKLIT 721
QEA+ S +V +H LA++ R+NDRL+ K+++
Sbjct: 183 QEAVQSRFALVQFHGLALLHQIRQNDRLAISKMVS 217
>07_01_0718 +
5484553-5484601,5484836-5484933,5485028-5485078,
5485744-5485857,5485887-5485937,5485938-5486138,
5486240-5486341,5486879-5486986,5487053-5487286,
5488250-5488500,5488592-5488763,5489165-5489320,
5489405-5489455,5489499-5489591,5489814-5490014,
5490105-5490236,5490308-5490481,5490755-5490994,
5491213-5491407
Length = 890
Score = 205 bits (500), Expect = 3e-53
Identities = 111/222 (50%), Positives = 140/222 (63%), Gaps = 17/222 (7%)
Frame = +2
Query: 107 KEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEELTTQEATDIFF 286
+EE + F ++K +LQEAR F+ + R+C ++TK+LYLLNQG+ T EAT++FF
Sbjct: 15 EEEYYSPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFF 74
Query: 287 ATTKLFQSKDVVLRRLVYLCIKELSPMAQD-----------------VIIVTSSLTKDMT 415
ATTKLFQSKD LRR+VYL IKELSP A + VIIVTSSL KDM
Sbjct: 75 ATTKLFQSKDAGLRRMVYLMIKELSPSADEFSAVYGSLKVSVLHLLQVIIVTSSLMKDMN 134
Query: 416 GKDDEYRPAAIRALCSITDSTMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXXXPDLV 595
K D YR AIR LC I DST+L IERY+KQAIVDKNP P++V
Sbjct: 135 SKTDMYRANAIRVLCRIIDSTLLTQIERYLKQAIVDKNPVVASAALVSGIYLLQTSPEVV 194
Query: 596 RRWINEAQEAMTSDHVMVSYHALAVVAGARRNDRLSTVKLIT 721
+RW NE QEA+ S +V +HALA++ R+NDRL+ KL+T
Sbjct: 195 KRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVT 236
>08_02_0707 - 20212190-20214592
Length = 800
Score = 31.5 bits (68), Expect = 0.72
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = -2
Query: 565 QSGDQCGRSYCRILINNSLFHVPLNSLQHCTVCDATQSSNGGRSVLIVFTRHVLRK*RSH 386
QSGD + I + ++ +PLNS+ T C S NGG L H + R H
Sbjct: 599 QSGDHAHQDISNISSDPAILEIPLNSIH--THCSEAHSCNGG---LQSSENHNKSRNRHH 653
Query: 385 NDH 377
DH
Sbjct: 654 IDH 656
>11_04_0414 + 17386806-17387936
Length = 376
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 329 RLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEYRPAAIRALCSI 466
R+VY+C + S++ K +T DE+ PAA A SI
Sbjct: 183 RIVYVCRDPKDAFVSMWLFTMSNMVKGVTTTTDEHHPAAAAAAPSI 228
>01_06_1795 -
39925019-39926029,39926265-39926408,39927200-39927277,
39927722-39927838,39927925-39927981,39928492-39928623,
39928725-39928922,39929364-39929474,39929570-39929785,
39929879-39930064,39930590-39931192
Length = 950
Score = 29.1 bits (62), Expect = 3.8
Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 1/140 (0%)
Frame = +2
Query: 77 QSIMKARRDGKEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEEL 256
+SI +AR EED + + LD R V RK +L +++Y E+
Sbjct: 30 KSIGEARSKA-EEDRIISRELDHLK-----RRLADPDVPRRKMKELLLRLVYA-----EM 78
Query: 257 TTQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQD-VIIVTSSLTKDMTGKDDEY 433
+A+ K+ + + L+R YL + D VI+V +++ KD+ +
Sbjct: 79 LGHDASFGHIHAVKMTHDESLPLKRTGYLAVSLFLDERHDLVILVVNTIQKDLRSDNYLV 138
Query: 434 RPAAIRALCSITDSTMLQAI 493
AA+ A C + + A+
Sbjct: 139 VCAALTAACRLIGEEAIPAV 158
>06_03_1359 +
29554078-29554375,29554470-29554655,29554768-29554923,
29555557-29555694,29555789-29555909,29556339-29556345
Length = 301
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 508 FHVPLNSLQHCT--VCDATQSSNGGRSVLIVFTRHVLRK*RSHNDHI 374
FHV +HC + + ++SS GG+S + +F+RH R S + +
Sbjct: 122 FHV---CTEHCAAKMAEVSRSSEGGKSPMSLFSRHSRRSSSSEDGSV 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,976,660
Number of Sequences: 37544
Number of extensions: 415239
Number of successful extensions: 1137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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