Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10k02
(734 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34450.1 68417.m04896 coatomer gamma-2 subunit, putative / ga... 221 4e-58
At5g11490.1 68418.m01341 adaptin family protein similar to SP|Q9... 36 0.037
At3g20190.1 68416.m02559 leucine-rich repeat transmembrane prote... 33 0.15
At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to SP... 31 1.0
At1g60070.1 68414.m06767 gamma-adaptin, putative similar to gamm... 29 3.2
At5g42340.1 68418.m05155 armadillo/beta-catenin repeat family pr... 28 7.4
At3g09220.1 68416.m01096 laccase family protein / diphenol oxida... 27 9.8
At1g07270.1 68414.m00773 cell division control protein CDC6b, pu... 27 9.8
>At4g34450.1 68417.m04896 coatomer gamma-2 subunit, putative /
gamma-2 coat protein, putative / gamma-2 COP, putative
similar to SP|Q9UBF2 Coatomer gamma-2 subunit (Gamma-2
coat protein) (Gamma-2 COP) {Homo sapiens}; contains
Pfam profile: PF01602 Adaptin N terminal region
Length = 886
Score = 221 bits (540), Expect = 4e-58
Identities = 111/215 (51%), Positives = 142/215 (66%), Gaps = 1/215 (0%)
Frame = +2
Query: 77 QSIMKARRDGKEE-DSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEE 253
Q ++K D +E + + F ++K +LQEAR FN V PR+C ++TK+LYLLNQGE
Sbjct: 3 QPLVKKDDDHDDELEYSPFMGIEKGAVLQEARVFNDPQVDPRRCSQVITKLLYLLNQGES 62
Query: 254 LTTQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSSLTKDMTGKDDEY 433
T EAT++FF+ TKLFQSKD LRR+VYL IKELSP + +VIIVTSSL KDM K D Y
Sbjct: 63 FTKVEATEVFFSVTKLFQSKDTGLRRMVYLIIKELSPSSDEVIIVTSSLMKDMNSKIDMY 122
Query: 434 RPAAIRALCSITDSTMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXXXPDLVRRWINE 613
R AIR LC I D T+L IERY+KQAIVDKNP P++V+RW NE
Sbjct: 123 RANAIRVLCRIIDGTLLTQIERYLKQAIVDKNPVVSSAALVSGLHLLKTNPEIVKRWSNE 182
Query: 614 AQEAMTSDHVMVSYHALAVVAGARRNDRLSTVKLI 718
QE + S +V +HALA++ R+NDRL+ KL+
Sbjct: 183 VQEGIQSRSALVQFHALALLHQIRQNDRLAVSKLV 217
>At5g11490.1 68418.m01341 adaptin family protein similar to
SP|Q9WV76 Adapter-related protein complex 4 beta 1
subunit (Beta subunit of AP- 4) {Mus musculus},
beta-adaptin Drosophila 1 {Drosophila melanogaster}
GI:434902; contains Pfam profile: PF01602 Adaptin N
terminal region
Length = 841
Score = 35.5 bits (78), Expect = 0.037
Identities = 19/89 (21%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = +2
Query: 266 EATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVTSS-LTKDMTGKDDEYRPA 442
+ + +F + D+VL+++ YL + + D+ ++T + L +D +D R
Sbjct: 60 DVSSVFGEMVMCSATSDIVLKKMCYLYVGNYAKGNPDLSLLTINFLQRDCKDEDPMIRGL 119
Query: 443 AIRALCSITDSTMLQAIERYMKQAIVDKN 529
A+R+LCS+ +++ + + + D N
Sbjct: 120 ALRSLCSLRVPNLVEYLVGPLGSGLKDNN 148
>At3g20190.1 68416.m02559 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor kinase GB:AAA33715
[Petunia integrifolia]
Length = 679
Score = 33.5 bits (73), Expect = 0.15
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = -3
Query: 300 SFVVAKNISVASCVVNSSPWFSK*SIFVKIW---MHFLGCTG-VELKYLASCKRVVLSRF 133
SF+ + + S++ C NS WF + +W + +G TG ++L+ LA+ K + F
Sbjct: 67 SFISSWDPSISPCKRNSENWFGVLCVTGNVWGLQLEGMGLTGKLDLEPLAAIKNLRTLSF 126
Query: 132 WKTLLSSSFPSRRAF 88
+ S PS + F
Sbjct: 127 MNNKFNGSMPSVKNF 141
>At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to
SP|Q9UPM8 Adapter-related protein complex 4 epsilon 1
subunit (Epsilon subunit of AP-4) (AP-4 adapter complex
epsilon subunit) {Homo sapiens}; contains Pfam profile:
PF01602 Adaptin N terminal region
Length = 938
Score = 30.7 bits (66), Expect = 1.0
Identities = 31/140 (22%), Positives = 65/140 (46%), Gaps = 1/140 (0%)
Frame = +2
Query: 77 QSIMKARRDGKEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCIHILTKILYLLNQGEEL 256
+SI +AR EED V +D +L+ R + RK + +++Y+ E+
Sbjct: 30 KSIGEARSKA-EEDRIVLSEVD---ILK--RRLLEPDIPKRKMKEYIIRLVYI-----EM 78
Query: 257 TTQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQDVII-VTSSLTKDMTGKDDEY 433
+A+ + K+ +++L+R YL + D+II + +++ KD+ +
Sbjct: 79 LGHDASFGYIYAVKMTHDDNLLLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLRSDNYLV 138
Query: 434 RPAAIRALCSITDSTMLQAI 493
AA+ A+C + + + A+
Sbjct: 139 VCAALNAICRLINEETIPAV 158
>At1g60070.1 68414.m06767 gamma-adaptin, putative similar to
gamma-adaptin GI:2765190 from [Homo sapiens]; contains
Pfam profiles PF01602: Adaptin N terminal region,
PF02883: Adaptin C-terminal domain
Length = 867
Score = 29.1 bits (62), Expect = 3.2
Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Frame = +2
Query: 206 IHI-LTKILYLLNQGEELTTQEATDIFFATTKLFQSKDVVLRRLVYLCIKELSPMAQD-- 376
+HI L K+L +L QG+ + DI +S ++Y C++ + + ++
Sbjct: 249 LHIRLLKLLRVLGQGDADASDCMNDILAQVASKTESNKNAGNAILYECVQTIMSIEENGG 308
Query: 377 -VIIVTSSLTKDMTGKDDEYRPAAIRALC-SITDSTMLQAIERY 502
++ + L K ++ +D+ R A+ L S+T + QA++R+
Sbjct: 309 LRVLAINILGKFLSNRDNNIRYVALNMLMRSLTVDS--QAVQRH 350
>At5g42340.1 68418.m05155 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein low similarity
to immediate-early fungal elicitor protein CMPG1
[Petroselinum crispum] GI:14582200, GI:14582198;
contains Pfam profiles PF04564: U-box domain, PF00514:
Armadillo/beta-catenin-like repeat
Length = 656
Score = 27.9 bits (59), Expect = 7.4
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 10/116 (8%)
Frame = +2
Query: 74 EQSIMKARRDGKEEDSNVFQNLDKTTLLQEARYFNSTPVHPRKCI------HILTK--IL 229
+ ++ ++ D + DS + + L K LQ + + + I +I TK I+
Sbjct: 192 DMMVVFSKTDPRNADSAIIERLAKKLELQTIDDLKTETIAIQSLIQDKGGLNIETKQHII 251
Query: 230 YLLNQGEELTTQEATDIFF--ATTKLFQSKDVVLRRLVYLCIKELSPMAQDVIIVT 391
LLN+ ++L EATDI + K ++ +LC L M VII T
Sbjct: 252 ELLNKFKKLQGLEATDILYQPVINKAITKSTSLILPHEFLCPITLEIMLDPVIIAT 307
>At3g09220.1 68416.m01096 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661201], laccase GB:CAA74105 [Populus
balsamifera subsp. trichocarpa]; contains Pfam profile:
Multicopper oxidases
Length = 567
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -3
Query: 420 LPVMSFVSEEVTMITSCAIGLNSLMHR*TKRRNTTSFD*NSFVVAKNISVASCV 259
+PV +V EE M+ + +GL + T + + S +SFV+ K +S+ V
Sbjct: 350 VPVPRYVDEE--MLVTIGLGLEACADNTTCPKFSASMSNHSFVLPKKLSILEAV 401
>At1g07270.1 68414.m00773 cell division control protein CDC6b,
putative (CDC6b) identical to CDC6b protein
(GI:18056482) {Arabidopsis thaliana}; contains Prosite
PS00017: ATP/GTP-binding site motif A (P-loop);
identical to cDNA CDC6b GI:18056481
Length = 505
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +2
Query: 47 FLNYNKILKEQSIMK---ARRDGKEEDSNVFQNLDKTTLLQEARYFNS 181
F N +L +Q I+K ARRD + S D T LQE R+F +
Sbjct: 455 FTNMCTVLNDQGILKVGQARRDKLKRVSLRVDESDITFALQEIRFFRN 502
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,080,662
Number of Sequences: 28952
Number of extensions: 336217
Number of successful extensions: 823
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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