Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k01
         (452 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    20   9.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    20   9.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   9.4  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -2

Query: 145 GKGAEMQVHRSDDNPEVNRL 86
           G+    + +RSD+ P++  L
Sbjct: 269 GRDENPRTYRSDEGPQITEL 288


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 10/39 (25%), Positives = 16/39 (41%)
 Frame = -2

Query: 217 ECNSCIC*CKDLQDSTVVLVARCSGKGAEMQVHRSDDNP 101
           EC    C    ++   VV   +C+ K  E +  +  D P
Sbjct: 242 ECRLKKCLSVGMRPECVVPEVQCAVKRKEKKAQKEKDKP 280


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 135 APLPEQRATNTTVLSCK 185
           +P P+QR+ + T LS K
Sbjct: 696 SPSPQQRSPSVTDLSTK 712


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,586
Number of Sequences: 336
Number of extensions: 2300
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10301074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)