Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10k01
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   4.1  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    25   4.1  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   5.4  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    25   7.2  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    24   9.5  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   9.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   9.5  

>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 242 FYSEFKNVLQVSFPETDGFSFQDIVF 319
           F +  K  L  +FP +D    +DI+F
Sbjct: 72  FQNNLKKQLSAAFPSSDTMQLEDIIF 97


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 267 KTFLNSL*KSSIALHNLSVTAVYVDARIYRIAPLC 163
           KT+ NSL  S+I +    +  V V+ RI R   LC
Sbjct: 407 KTYRNSLIVSAIGVPGSLIAGVLVEFRIGRKGTLC 441


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 399 LIYHVKIFYINYEQIKKK 452
           L+Y  K  Y+NY+++KK+
Sbjct: 11  LMYEYKYSYVNYDKLKKE 28


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 193 CKDLQDSTVVLVARCSGKGAEMQVHRSDDNPEVNRLVDNN 74
           CK  Q+S   +V+   G+GA+M      D+ ++ + +  N
Sbjct: 531 CKTFQNSISHIVSSFKGEGADMYADMLQDDVDLLKSIIEN 570


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 367 NRQFQFCYPTSRVRCNENNILKR 299
           N  ++FC   SR   ++N +LKR
Sbjct: 776 NEIYEFCGTHSRAEVHKNEVLKR 798


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 183 KSLHQHIQLLHSNYVTQW 236
           +S H +I  L+SNY T W
Sbjct: 166 QSAHPYISSLNSNYPTTW 183


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 360  NFSFAIQLLEYVVMKTIS*KENPSV-SGKETCKTFLNSL 247
            NF+ +I LLE  ++K++   + P V   K+ C T   S+
Sbjct: 3614 NFTLSISLLETQMLKSVISVQEPGVFKQKDNCFTLKLSI 3652


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,744,922
Number of Sequences: 5004
Number of extensions: 34871
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)