Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10k01
(452 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g11990.1 68418.m01402 proline-rich family protein contains pr... 32 0.21
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 31 0.48
At5g48100.1 68418.m05942 laccase family protein / diphenol oxida... 29 1.5
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 29 1.5
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex... 28 3.4
At5g49950.1 68418.m06185 embryogenesis-associated protein-relate... 27 5.9
At5g36050.1 68418.m04343 hypothetical protein includes At2g10370... 27 5.9
At4g19300.1 68417.m02844 hypothetical protein includes At2g10370... 27 5.9
At3g50090.1 68416.m05476 exonuclease family protein contains exo... 27 5.9
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 27 5.9
At1g23540.1 68414.m02960 protein kinase family protein contains ... 27 5.9
At5g63930.1 68418.m08028 leucine-rich repeat transmembrane prote... 27 7.8
At4g27110.1 68417.m03896 phytochelatin synthetase-related contai... 27 7.8
At4g24690.1 68417.m03534 ubiquitin-associated (UBA)/TS-N domain-... 27 7.8
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 27 7.8
>At5g11990.1 68418.m01402 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 181
Score = 31.9 bits (69), Expect = 0.21
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +1
Query: 79 CPPVCSPPDCRP---ICGPASPLLCQSSVPP 162
CP +CSPP +P + P SP L SS PP
Sbjct: 38 CPTICSPPPSKPSPSMSPPPSPSLPLSSSPP 68
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 30.7 bits (66), Expect = 0.48
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = +1
Query: 76 YCPPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCIN 198
YCPP PP C IC P P PPT + P N
Sbjct: 29 YCPP---PPPCICICNPGPPPPQPDPQPPTPPTFQPAPPAN 66
>At5g48100.1 68418.m05942 laccase family protein / diphenol oxidase
family protein similar to laccase [Pinus
taeda][GI:13661197]
Length = 565
Score = 29.1 bits (62), Expect = 1.5
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +2
Query: 101 RIVVRSVDLHLRSFARAACHQHNGAIL*ILASTYTAVTLKLCNAMDDFYSEFKNVLQVSF 280
R ++ +V ++LR + +C NG+ L + + VT + + +Y K V F
Sbjct: 350 RRIITTVSINLRMCPQNSCEGPNGSRLAASMNNISFVTPSHVDILKAYYYHIKGVYGTRF 409
Query: 281 PE 286
PE
Sbjct: 410 PE 411
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 29.1 bits (62), Expect = 1.5
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Frame = +1
Query: 76 YCPPVCSPP--DCRPICGPASP 135
+CP C C+PICGP SP
Sbjct: 35 FCPDSCHVECASCKPICGPPSP 56
>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 494
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 82 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNP 189
PPV SPP P+ P P S PP + +P
Sbjct: 431 PPVFSPPPSPPVYSPPPPPSIHYSSPPPPPVHHSSP 466
>At5g49950.1 68418.m06185 embryogenesis-associated protein-related
contains weak similarity to Embryogenesis-associated
protein EMB8 (Swiss-Prot:Q40863) [Picea glauca]
Length = 537
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 180 CKSLHQHIQLLHSNYVTQWTISIVNLKMSYKFLFPKQMGFLFK 308
CK + +LLH Y + +S +L+ ++ LF K F +K
Sbjct: 66 CKFIVSKCRLLHGRYFPTFWLSSPHLQTAFLTLFGKSPPFSYK 108
>At5g36050.1 68418.m04343 hypothetical protein includes At2g10370,
At5g36050, At1g35090, At1g44860, At4g19300, At1g42400,
At3g43040, At3g42500
Length = 252
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 192 HQHIQLLHSNYVTQWTISIVNLKMSYKFLFP 284
H H+ L S VT WTI ++ L++ KFL P
Sbjct: 4 HHHLYEL-SPMVTGWTICVMVLRIYKKFLNP 33
>At4g19300.1 68417.m02844 hypothetical protein includes At2g10370,
At5g36050, At1g35090, At1g44860, At4g19300, At1g42400,
At3g43040, At3g42500
Length = 252
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 192 HQHIQLLHSNYVTQWTISIVNLKMSYKFLFP 284
H H+ L S VT WTI ++ L++ KFL P
Sbjct: 4 HHHLYEL-SPMVTGWTICVMVLRIYKKFLNP 33
>At3g50090.1 68416.m05476 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 322
Score = 27.1 bits (57), Expect = 5.9
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 144 PEQRATNTTVLSCKSLHQHIQLLHSNYVTQWTISIVNLKMSYKFLFPKQM 293
PEQR L+ ++ ++ L +Y W +S V +KMS + P QM
Sbjct: 30 PEQRLVR---LTNENPQYNVDFLFHSYSKDWFVSDVGMKMS-NVMIPNQM 75
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +1
Query: 82 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCINIYS 207
PPV SPP PI P P + S PP Y P +YS
Sbjct: 496 PPVHSPPPPSPIHSPPPPPV--YSPPPPPPVYSPPPPPPVYS 535
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 82 PPVCSPPDCRPICGPASPLLCQSSVPP 162
PPV SPP P+ P P S PP
Sbjct: 522 PPVYSPPPPPPVYSPPPPPPVHSPPPP 548
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +1
Query: 82 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCI 195
PPV S P P ++P L + S PP P P I
Sbjct: 33 PPVDSSPPSPPADSSSTPPLSEPSTPPPDSQLPPLPSI 70
>At5g63930.1 68418.m08028 leucine-rich repeat transmembrane protein
kinase, putative
Length = 1102
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 266 LQVSFPETDGFSFQDIVFIT 325
L + FP +GF+FQD+V T
Sbjct: 782 LDIYFPPKEGFTFQDLVAAT 801
>At4g27110.1 68417.m03896 phytochelatin synthetase-related contains
Pfam PF04833: Phytochelatin synthetase-like conserved
region
Length = 668
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 214 CNSCIC*CKDLQDSTVVLVAR 152
CN+C C CKD+ T AR
Sbjct: 438 CNTCACGCKDIDTDTCNANAR 458
>At4g24690.1 68417.m03534 ubiquitin-associated (UBA)/TS-N
domain-containing protein / octicosapeptide/Phox/Bemp1
(PB1) domain-containing protein contains Pfam profiles
PF00627: Ubiquitin-associated (UBA)/TS-N domain,
PF00569: Zinc finger ZZ type domain, PF00564: PB1 domain
Length = 704
Score = 26.6 bits (56), Expect = 7.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 136 AEMQVHRSDDNPEVNRLVDNNPFFTFLIYRLVNLKNFTNISIKS 5
AE+ + SD++ +V LVD+N F RL LK N + +
Sbjct: 52 AELSLTYSDEDGDVVALVDDNDLFDVTNQRLKFLKINVNAGVST 95
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +1
Query: 82 PPVCSPPDCRPICGPASPLLCQSSVPPTQRCYPVNPCIN 198
PPV SPP PI P P+ P T +P N
Sbjct: 797 PPVHSPPPPSPIYSPPPPVFSPPPKPVTPLPPATSPMAN 835
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,959,970
Number of Sequences: 28952
Number of extensions: 186633
Number of successful extensions: 570
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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