Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j24
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    35   0.040
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    35   0.040
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    31   0.86 
U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1 prepropro...    29   2.0  
AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical...    29   2.0  
AF016447-13|AAG24017.1|  334|Caenorhabditis elegans Serpentine r...    29   2.6  
AC024877-7|AAF60907.3|  438|Caenorhabditis elegans Hypothetical ...    29   3.5  
L21758-1|AAA16827.1|  264|Caenorhabditis elegans osteonectin pro...    28   4.6  
AF036692-3|AAB88325.1|  264|Caenorhabditis elegans Osteonectin (...    28   4.6  

>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 35.1 bits (77), Expect = 0.040
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = -1

Query: 289 VCGSDGQTYRSLCKLRRQACRKPAKHLVVDYH 194
           VCGSDG+TY + C+L+  AC    K++ V Y+
Sbjct: 475 VCGSDGKTYSNECRLQNAAC-MAQKNIFVKYN 505



 Score = 34.3 bits (75), Expect = 0.070
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = -1

Query: 289 VCGSDGQTYRSLCKLRRQAC 230
           VCGSDG TY +LC+L+  AC
Sbjct: 880 VCGSDGTTYSNLCELKMFAC 899



 Score = 33.5 bits (73), Expect = 0.12
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -1

Query: 289 VCGSDGQTYRSLCKLRRQACRKPAKHLVVDYHG 191
           VCG+DG TY S C +++ AC + +K ++  + G
Sbjct: 551 VCGTDGVTYSSECHMKKSACHQ-SKFVMTAFEG 582



 Score = 31.9 bits (69), Expect = 0.37
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 307 CRRVSA-VCGSDGQTYRSLCKLRRQACRKPAKHLV 206
           C   SA VCG+DG+TY + C L+  AC++    LV
Sbjct: 323 CTMNSAHVCGTDGKTYLNECFLKLAACKEQKDILV 357



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 295 SAVCGSDGQTYRSLCKLRRQACRKPAKHLVVDYHG 191
           S VC S G  Y+S C LR  AC     ++ V + G
Sbjct: 258 SPVCSSHGVDYQSSCHLRHHACESKT-NITVKFFG 291



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 313 ASCRRVS-AVCGSDGQTYRSLCKLRRQAC 230
           A CR V+  VCGSD  +Y S C L  ++C
Sbjct: 167 ARCRVVTDVVCGSDHVSYSSFCHLSVRSC 195



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 289 VCGSDGQTYRSLCKLRRQACRKPA 218
           +CG +G  Y SLC L+  +C+K A
Sbjct: 619 ICGENGVLYPSLCHLQLASCQKGA 642



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 289 VCGSDGQTYRSLCKLRRQACRKPAKHLVVDYHGHY 185
           +CGSDG  Y + C L   +CR   +  V+    H+
Sbjct: 694 ICGSDGIVYNNQCHLNTISCRDQREIHVLPLISHW 728


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 35.1 bits (77), Expect = 0.040
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = -1

Query: 289 VCGSDGQTYRSLCKLRRQACRKPAKHLVVDYH 194
           VCGSDG+TY + C+L+  AC    K++ V Y+
Sbjct: 483 VCGSDGKTYSNECRLQNAAC-MAQKNIFVKYN 513



 Score = 35.1 bits (77), Expect = 0.040
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = -1

Query: 289 VCGSDGQTYRSLCKLRRQACR 227
           VCGSDG TY +LC+L+  AC+
Sbjct: 819 VCGSDGTTYSNLCELKMFACK 839



 Score = 33.5 bits (73), Expect = 0.12
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -1

Query: 289 VCGSDGQTYRSLCKLRRQACRKPAKHLVVDYHG 191
           VCG+DG TY S C +++ AC + +K ++  + G
Sbjct: 559 VCGTDGVTYSSECHMKKSACHQ-SKFVMTAFEG 590



 Score = 31.9 bits (69), Expect = 0.37
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 307 CRRVSA-VCGSDGQTYRSLCKLRRQACRKPAKHLV 206
           C   SA VCG+DG+TY + C L+  AC++    LV
Sbjct: 331 CTMNSAHVCGTDGKTYLNECFLKLAACKEQKDILV 365



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 295 SAVCGSDGQTYRSLCKLRRQACRKPAKHLVVDYHG 191
           S VC S G  Y+S C LR  AC     ++ V + G
Sbjct: 266 SPVCSSHGVDYQSSCHLRHHACESKT-NITVKFFG 299



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 313 ASCRRVS-AVCGSDGQTYRSLCKLRRQAC 230
           A CR V+  VCGSD  +Y S C L  ++C
Sbjct: 175 ARCRVVTDVVCGSDHVSYSSFCHLSVRSC 203



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 289 VCGSDGQTYRSLCKLRRQACRKPA 218
           +CG +G  Y SLC L+  +C+K A
Sbjct: 627 ICGENGVLYPSLCHLQLASCQKGA 650


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 289 VCGSDGQTYRSLCKLRRQAC 230
           +C SD  TY +LC+ R+Q C
Sbjct: 597 ICASDFSTYENLCQFRKQKC 616



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 289 VCGSDGQTYRSLCKLRRQACRKPAKHLVVDYHG 191
           +CG++G T+ + C L+++ C      + V Y G
Sbjct: 779 LCGTNGVTFTNACSLQKEICESANSTIEVAYTG 811



 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -1

Query: 295  SAVCGSDGQTYRSLCKLRRQAC---RKPAKHLVVDYHG 191
            S VC ++G T+ ++C + + AC   +K  K + V Y G
Sbjct: 930  SPVCDTEGVTHANMCLMDQNACIQMKKNKKTIQVSYQG 967



 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 307  CRRVSAVCGSDGQTYRSLCKLRRQAC 230
            C    AVC S+GQT+ + C  +++ C
Sbjct: 1024 CESSGAVCDSEGQTHMNHCVYQQRRC 1049



 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 298 VSAVCGSDGQTYRSLCKLRRQACRKPAKHLVVDYHG 191
           +  VCG+D  TY +LC LR    ++  + L+  Y+G
Sbjct: 25  IRPVCGTDNVTYNNLCFLR--CVQRTNEDLLFFYNG 58


>U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1
           preproprotein protein.
          Length = 1042

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 289 VCGSDGQTYRSLCKLRRQACRK 224
           VCG+DGQ +R  C    Q C+K
Sbjct: 527 VCGTDGQCWRGNCSDSHQQCQK 548


>AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical
           protein Y37D8A.13 protein.
          Length = 1042

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 289 VCGSDGQTYRSLCKLRRQACRK 224
           VCG+DGQ +R  C    Q C+K
Sbjct: 527 VCGTDGQCWRGNCSDSHQQCQK 548


>AF016447-13|AAG24017.1|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein268 protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 186 IKILSTKSYLIFSQNINFRYVLVVSTMFGY 97
           I I+  + Y++F+QN  +R   ++ T+F Y
Sbjct: 107 IDIIENRYYIVFAQNTKWRRYRIILTIFNY 136


>AC024877-7|AAF60907.3|  438|Caenorhabditis elegans Hypothetical
           protein Y95B8A.11 protein.
          Length = 438

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = +3

Query: 450 VEFYKNTVF*LIILNHRRYPLIA*ISESINFNIRES 557
           ++FY+N +F  +I NH  + + + ++ S+NF+  ES
Sbjct: 11  IDFYRNFLF--LIFNHFNFEMASSVTTSLNFSNLES 44


>L21758-1|AAA16827.1|  264|Caenorhabditis elegans osteonectin
           protein.
          Length = 264

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 289 VCGSDGQTYRSLCKLRRQAC 230
           VC ++ QT+ SLC L R+ C
Sbjct: 91  VCANNNQTFTSLCDLYRERC 110


>AF036692-3|AAB88325.1|  264|Caenorhabditis elegans Osteonectin
           (sparc) related protein1 protein.
          Length = 264

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 289 VCGSDGQTYRSLCKLRRQAC 230
           VC ++ QT+ SLC L R+ C
Sbjct: 91  VCANNNQTFTSLCDLYRERC 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,627,240
Number of Sequences: 27780
Number of extensions: 244353
Number of successful extensions: 577
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)