Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j24
         (616 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27600.2 68414.m03368 glycosyl transferase family 43 protein ...    27   1.8  
At1g27600.1 68414.m03367 glycosyl transferase family 43 protein ...    27   1.8  

>At1g27600.2 68414.m03368 glycosyl transferase family 43 protein
           similar to Galactosylgalactosylxylosylprotein
           3-beta-glucuronosyltransferase 1, Rattus norvegicus
           [SP|O35789], Homo sapiens [SP|Q9P2W7]; contains Pfam
           domain Glycosyltransferase family 43 [PF03360]
          Length = 394

 Score = 27.1 bits (57), Expect(2) = 1.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 464 FIKFNLIVLVLKTYNNLTRLYFFNRI 387
           F+   L+++V  TYN   + Y+ NR+
Sbjct: 137 FVPKKLLIVVTPTYNRAMQAYYLNRV 162



 Score = 21.0 bits (42), Expect(2) = 1.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 326 VCLRGVVPQSERGVRQRRADL 264
           VC R +    +RGV QR   L
Sbjct: 202 VCKRNMTSIKDRGVHQRNTAL 222


>At1g27600.1 68414.m03367 glycosyl transferase family 43 protein
           similar to Galactosylgalactosylxylosylprotein
           3-beta-glucuronosyltransferase 1, Rattus norvegicus
           [SP|O35789], Homo sapiens [SP|Q9P2W7]; contains Pfam
           domain Glycosyltransferase family 43 [PF03360]
          Length = 308

 Score = 27.1 bits (57), Expect(2) = 1.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 464 FIKFNLIVLVLKTYNNLTRLYFFNRI 387
           F+   L+++V  TYN   + Y+ NR+
Sbjct: 51  FVPKKLLIVVTPTYNRAMQAYYLNRV 76



 Score = 21.0 bits (42), Expect(2) = 1.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 326 VCLRGVVPQSERGVRQRRADL 264
           VC R +    +RGV QR   L
Sbjct: 116 VCKRNMTSIKDRGVHQRNTAL 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,458,036
Number of Sequences: 28952
Number of extensions: 209944
Number of successful extensions: 381
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)