Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j19
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    29   0.81 
SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom...    27   3.3  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    26   4.3  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    26   5.7  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    25   7.5  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   7.5  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   9.9  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    25   9.9  

>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = +1

Query: 508 PL*RTRDTGRE--LTDMESVAKARDRLAKYPLLYAKC--SKQGALYAH 639
           P  R+R++ R   +TD++  +KA+  L +  LLY  C  S+ G  + H
Sbjct: 13  PTSRSRESSRSPSVTDLKDHSKAKRTLCRNILLYGSCKHSENGCAFRH 60


>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 320 TWSLNMWPVGHRRELS 273
           TW L+ WP GH  E++
Sbjct: 272 TWRLSSWPTGHYAEIT 287


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -3

Query: 514 IKESRRGLGEVDRIARPYEDIVDRLREEYSEGKGSK 407
           ++E RR   E DR++  +E +  + RE+Y++ +  +
Sbjct: 539 LEEQRRKKKEQDRLSGKFEKMTQKEREQYAKKENER 574


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 478 DRPLRAPDDFPL*RTRDTGR-ELTDM 552
           D+PL +PDD+ L  TR  G+  +TD+
Sbjct: 594 DKPLYSPDDWELYFTRPDGKHSMTDL 619


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 215 LSHHFEHLIAADFLVAVLNKTPLDL 141
           LSHHF    A  F+ + ++K PL L
Sbjct: 231 LSHHFGGATARPFITSDIHKLPLTL 255


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 35  VKYTHKRISKIVSAFCTKTFNFFIY 109
           +KY  KR+S+ +S    + F  F+Y
Sbjct: 594 IKYLFKRVSETLSTASLECFRIFVY 618


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -3

Query: 151  LWISHANLLQGSFDINKKIKCF 86
            ++  + +LL+G+FD N+++K F
Sbjct: 1693 IYSDYLDLLEGNFDANQELKLF 1714


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 48  IKEFLKL*-VLFVRKHLIFLFMSKDPC 125
           + +FL L   LFVRK   FLF+   PC
Sbjct: 105 LHQFLALNWALFVRKPASFLFIQNPPC 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,006
Number of Sequences: 5004
Number of extensions: 55489
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)