Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j19
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0530 - 4191185-4191290,4191386-4191429,4192165-4192296,419...    35   0.051
01_03_0138 + 12963464-12965059,12965085-12965660                       29   4.5  
04_01_0458 - 5939496-5939929,5940071-5940141,5940319-5940635           28   7.8  

>12_01_0530 -
           4191185-4191290,4191386-4191429,4192165-4192296,
           4192541-4192630
          Length = 123

 Score = 35.1 bits (77), Expect = 0.051
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 111 SKDPCKRFACEIQRCLVENGYQEVRCDKVFEVMRQC 218
           SK+PCK+ AC+IQ CL +N +   +    F V   C
Sbjct: 5   SKEPCKKEACDIQACLSKNMFDSKKYVYGFLVFTSC 40


>01_03_0138 + 12963464-12965059,12965085-12965660
          Length = 723

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -3

Query: 493 LGEVDRIARPYEDIVDRLREEYSEGKG 413
           LG+ D++ R    IV RL EE++EG+G
Sbjct: 628 LGDRDKVLRDGVAIVGRLVEEFAEGEG 654


>04_01_0458 - 5939496-5939929,5940071-5940141,5940319-5940635
          Length = 273

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +2

Query: 380 KYPKTFQIT--FTAFALGIFFSKPIYDIFIRPRDTI-DLSEPPTTFLYKEL 523
           K+ K   +T  FTA+ + + F + +YD+F  P+  I D     T+ L++EL
Sbjct: 54  KFAKFIPLTHPFTAYTVALAFIQHVYDVFGMPQVIISDRDRIFTSALWQEL 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,134,175
Number of Sequences: 37544
Number of extensions: 342449
Number of successful extensions: 806
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)