Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j19
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15617| Best HMM Match : Glycoprotein_G (HMM E-Value=4.8)            31   0.84 
SB_15247| Best HMM Match : Hormone_5 (HMM E-Value=0.98)                29   4.5  
SB_7596| Best HMM Match : WD40 (HMM E-Value=7.1e-15)                   29   4.5  
SB_43817| Best HMM Match : WD40 (HMM E-Value=1e-13)                    28   6.0  
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  

>SB_15617| Best HMM Match : Glycoprotein_G (HMM E-Value=4.8)
          Length = 554

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 467 PRDTIDLSEPPTTFLYKELETQAEN*LIWNQLQKQGTDSRNIPSYTRSARNR-ALCTPTA 643
           PR T  + E P+TF++K          I +QL +Q  D    P    +  +R ++   T+
Sbjct: 336 PRQTASVKELPSTFVHKRTRRSDYKSEITSQLSRQSDDDNETPQAETTIDSRPSIVNGTS 395

Query: 644 C 646
           C
Sbjct: 396 C 396


>SB_15247| Best HMM Match : Hormone_5 (HMM E-Value=0.98)
          Length = 997

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = -1

Query: 204 LRTPYRSGLPGSRSQQDTSGSHTQISYR---DPST*IKKLNVFVQK 76
           LR+P++S  PGS S   + G+  ++S+     PST +++L+V   K
Sbjct: 200 LRSPFKSLFPGSLSPSLSLGNDMRMSFSSELSPSTQVEELSVLNNK 245


>SB_7596| Best HMM Match : WD40 (HMM E-Value=7.1e-15)
          Length = 291

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
 Frame = -3

Query: 505 SRRGLGEVDRIARPYEDIV---DRLREEYSEGKGSKSYLKGLRILINPTSLA*G---CAT 344
           SR G   V  +A   ED+V    R +E+    KGSKS + G+ I  +  SLA G    A 
Sbjct: 30  SREGARGVLAVAAALEDVVIWDTRRQEKVLVLKGSKSEVTGMAISPDNKSLAAGGHRSAV 89

Query: 343 TTLIIHNIPGHLICGLSVT 287
           + L   +  G L  G  VT
Sbjct: 90  SVLKFDHTEGLLASGSRVT 108


>SB_43817| Best HMM Match : WD40 (HMM E-Value=1e-13)
          Length = 822

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +2

Query: 377 YKYPKTFQITFTAFALGIFFSKPIYDIFIRPRDTIDLSEPPTTFLYKELETQAEN*LIWN 556
           Y Y KT ++    F  G++ S  +Y   I P +   L     T + KE+         W+
Sbjct: 137 YSYLKTIRLCANMFVKGVYTSDMVYQPGISPSEARKLGLAGVTPMPKEMALHVPKGGDWS 196

Query: 557 QL 562
           +L
Sbjct: 197 EL 198


>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3261

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 42   IHIKEFLKL*VLFVRKHLIFLFMSKDPCKRFACEIQ 149
            +H +    + VLFV K +       DPC+R+ C  Q
Sbjct: 2951 VHFRFRFSIDVLFVDKTIKHKLDQSDPCERYKCRYQ 2986


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,311,780
Number of Sequences: 59808
Number of extensions: 423199
Number of successful extensions: 1146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)