Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10j19
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02340.1 68418.m00157 DC1 domain-containing protein contains ...    29   2.8  
At5g62270.1 68418.m07818 expressed protein                             28   4.9  
At1g29730.1 68414.m03634 leucine-rich repeat transmembrane prote...    28   4.9  
At3g16880.1 68416.m02158 F-box protein-related contains weak hit...    28   6.5  
At5g67250.1 68418.m08477 SKP1 interacting partner 2 (SKIP2) iden...    27   8.6  

>At5g02340.1 68418.m00157 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 631

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
 Frame = +3

Query: 9   CLGCHFQILLN-IHIKEFLKL*VLFVRKHLIFLFMSKDPCKRFACEIQRCLVENGYQEVR 185
           C+ C F +  + I+    +K+     R H   +F S  P  +++C + R  V+N Y    
Sbjct: 236 CVPCDFVVHQDCIYFPHIIKI----SRHHHRIIFTSSLPSAKWSCGVCRGEVDNHYGAYS 291

Query: 186 CDKV--FEVMRQCCIKHKPRSLVCEGYDLE 269
           C+K   + V  +C +    R  V  G DLE
Sbjct: 292 CNKCGDYFVHTRCAL----RKDVWNGEDLE 317


>At5g62270.1 68418.m07818 expressed protein
          Length = 383

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 517 FIKESRRGLGEVDRIARPYEDIVDRLREEYSE 422
           F+KE      E  ++ RP +D VDRL +EY E
Sbjct: 221 FLKEDEEE--EERKLGRPLDDSVDRLLDEYPE 250


>At1g29730.1 68414.m03634 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam domains, PF00560: Leucine
           Rich Repeat and PF00069: Protein kinase domain
          Length = 940

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 102 LFMSKDPCKRFACEIQRCLVENGYQE-VRCDKVFEVMRQCCIKH 230
           L +S+DPC      I + +++ G    +RCD  F     C IKH
Sbjct: 59  LNLSEDPCLTKTLVISQGVLKEGQNSTIRCDCHFNNYSTCHIKH 102


>At3g16880.1 68416.m02158 F-box protein-related contains weak hit to
           Pfam PF00646: F-box domain; contains weak hit to TIGRFAM
           TIGR01640: F-box protein interaction domain
          Length = 365

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
 Frame = -3

Query: 244 NDLGLCLIQHCR----ITSNTLSQR-TSW*PFSTRHLWIS----HANLLQGSFDINKKIK 92
           N +G+C + HC     IT +  + R   W P+  +  WI     HA +    ++  K  +
Sbjct: 92  NPIGMCRVYHCGGLVCITKSFSNTRDVVWNPYLGQTRWIKPRSHHAYIYAIGYETKKSCR 151

Query: 91  CFR-TKSTHNFRN 56
            ++   S HN+ N
Sbjct: 152 SYKILSSEHNYIN 164


>At5g67250.1 68418.m08477 SKP1 interacting partner 2 (SKIP2)
           identical to SKP1 interacting partner 2 GI:10716949 from
           [Arabidopsis thaliana]
          Length = 527

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +1

Query: 535 RELTD--MESVAKARDRLAKYPLLYAKCSKQG--ALYAHCVLIKESSVKK 672
           RE+TD  ME  AK    L K  +       +G  A+  HC L++E SVK+
Sbjct: 144 REITDLGMEDFAKNCKNLKKLSVGSCNFGAKGVNAMLEHCKLLEELSVKR 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,049,168
Number of Sequences: 28952
Number of extensions: 287787
Number of successful extensions: 678
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)